Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27l18
         (212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   1.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   1.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   2.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   3.8  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   5.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   5.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   5.1  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 197 LKFIEIYVK*YRHDIIIWTSFL 132
           +K I I  K  ++D+I+W  F+
Sbjct: 72  MKCIMIATKAMKNDVILWDFFV 93


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 197 LKFIEIYVK*YRHDIIIWTSFL 132
           +K I I  K  ++D+I+W  F+
Sbjct: 46  MKCIMIATKAMKNDVILWDFFV 67


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -1

Query: 167 YRHDIIIWTSFLTHF 123
           Y H   +W   L HF
Sbjct: 151 YSHQTDVWVELLKHF 165


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 93  NFSIYIKHLLKMSQERCPDYYIVPILFYIY 182
           N  +Y  H   MSQ+     Y+V I+F  Y
Sbjct: 217 NLLLY-NHARLMSQDNHSKEYLVSIMFSHY 245


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 151 IISCLYYFTYISINFNS 201
           I SCL++F  I I  +S
Sbjct: 375 IWSCLFFFMLILIGLDS 391


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 151 IISCLYYFTYISINFNS 201
           I SCL++F  I I  +S
Sbjct: 428 IWSCLFFFMLILIGLDS 444


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 90  LNFSIYIKHLLKMS 131
           +N  +YI+HL K++
Sbjct: 90  INSVVYIEHLTKLN 103


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 148 IIISCLYYFT 177
           I+  CLYYF+
Sbjct: 311 ILSGCLYYFS 320


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 71  IYYGLCVFYLVWLTSG 24
           I+YG+C  YL  ++ G
Sbjct: 930 IHYGVCSNYLREISDG 945


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,177
Number of Sequences: 438
Number of extensions: 905
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)