Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27l12
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   4.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   4.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 134 SNSIIASGALAAGTIASPWSTPAG 205
           +  ++  G L +GT+ +PWS  +G
Sbjct: 268 TRGLVRRGILQSGTLNAPWSYMSG 291


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 134 SNSIIASGALAAGTIASPWSTPAG 205
           +  ++  G L +GT+ +PWS  +G
Sbjct: 268 TRGLVRRGILQSGTLNAPWSYMSG 291


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 534 LKCNFGSQAYKPAHHRM*SLSPVRATKASP 623
           LKC  G     P   R+ SL+P+    A P
Sbjct: 52  LKCALGEAPCDPVGRRLKSLAPLVLRGACP 81


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 534 LKCNFGSQAYKPAHHRM*SLSPVRATKASP 623
           LKC  G     P   R+ SL+P+    A P
Sbjct: 52  LKCALGEAPCDPVGRRLKSLAPLVLRGACP 81


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 357 TRPVDDAKLFSPTRARCTEGT 419
           TRPV   ++ SP RAR    T
Sbjct: 168 TRPVSYPQIMSPRRARLLVAT 188


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   TRCAFVACVVGILCAILRIPIRVYSLNLVLN 97
           T   +V  VVG+  A  +IP+ V  L + L+
Sbjct: 161 TATVYVMSVVGLSKAPAQIPVDVLVLTVTLS 191


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 203 GAPDTNGSGGADAKHLDVGDASDDEKD 283
           GA + NG    +    D  D  DD+ D
Sbjct: 377 GAMNANGEAVGEVDEDDDDDGDDDDDD 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,990
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)