Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27k18
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    29   0.50 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    29   0.88 
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    29   0.88 
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    27   2.0  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   2.0  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   3.5  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    26   4.7  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   6.2  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.2  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 230 KTLEKSNKGLSSQCSNNIYIKKEFDDTSCRICLKEGCIPIYS 355
           ++L+K+  GLS      +       + +C IC  EGC+P +S
Sbjct: 107 ESLQKAGVGLSGSKQREVV----HHEGTCEICYDEGCLPFFS 144


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 129 LYKKKVLSIYYYVVCSLFLFIKQY*YLIYVNTVITRTKSYYL 4
           +++ K+L    YV   +  F+  Y + I VNTV +  +S++L
Sbjct: 705 IWQPKILLGIMYVTDLVLFFLDTYLWYILVNTVFSVARSFFL 746


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 75  ERDYILHNNILIKPFFCTIKYIFLKPIQSSIQYTTWLARC 194
           E++  L+    ++ F   I Y FLK  +  I+  TW+A C
Sbjct: 288 EKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAEC 327


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
 Frame = +2

Query: 125 YNQIHIFKTNTKLDSIHNMVGPMLLFKMLHCKHLRKTLEKSN---KGLSSQCSNNIYIKK 295
           +  +H+F+T+      H ++    +      K +   L KS+   K  S + + ++YI++
Sbjct: 91  HRPLHLFQTS----ECHELIQEESVKSPSITKEVEACLPKSSFLTKPTSEKQTKHVYIRR 146

Query: 296 EFDDTSCRICLKEGCIPIYSNDE---IPQALSS 385
           +  D+  ++C++E     Y N +   IP+ L S
Sbjct: 147 KIYDSQHQLCIEEDRTLAYLNRQELAIPKTLRS 179


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 407 YLQICRQKSLKPVVFRR---CCRLVCNLLSNKFYMKY 306
           Y+ I R   +   ++RR   CC  +C+L+ +K+Y+ Y
Sbjct: 33  YISIRRLLIVVITLYRRIVECCASLCSLIFSKYYLHY 69


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  DYILHNNILIKPFFCTIKYIF 143
           + IL +N+L K FFCT + +F
Sbjct: 168 ELILFDNVLGKAFFCTFQLLF 188


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 314 CRICLKEGCIPIYSNDEIPQALSSFGGIFVSISDPYPKYLCQPC 445
           C  C K   I  YS  +  +  +   G  VS+SD  PK +C+ C
Sbjct: 42  CMRCRKVKGIDSYSKTQWSKTFTFVRGRTVSVSD--PKVICRTC 83


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 194 LLFKMLHCKHLRKTLEKSNKGLSSQCSNNIYIKKEFDD-TSCRIC 325
           L + +  C +   T   +N+ + S C NN+   +E DD   C +C
Sbjct: 129 LPYPITTCLNDDTTTRSNNQVIQSSCGNNLQRIEEPDDFVECPVC 173


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 129 LYKKKVLSIYYYVVCSLFLFIKQY*YLIYVNTVITRTKSYYLP 1
           LY   +  IY+Y + S  L      Y +  N++ITR    Y P
Sbjct: 288 LYTSVIPLIYFYSILSHLLVFAYALYSLCPNSLITRLLVQYSP 330


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 603 SKLQRSKTKSQKITIVKNVTWN 668
           S + R +T  +K TIVK   WN
Sbjct: 503 SSILRGRTADEKYTIVKRDVWN 524


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 281  IYIKKEFDDTSCRICLKEGCIPIYSNDEIPQALSSFGGIFVSISDPYPKYLCQPCYSLLQ 460
            I +  E++D   ++  KE    I+SN++    LS         S+P+ + LC    SLL+
Sbjct: 1925 IKVLLEWNDLQLKVDQKE----IFSNNQKRAILSYLFRFVCLFSEPFTEGLCSEAISLLE 1980


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,215
Number of Sequences: 5004
Number of extensions: 56255
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)