Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27k07
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 157 6e-40
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 70 2e-13
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 29 0.48
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 1.9
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 3.4
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 3.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 5.9
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 25 7.8
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 157 bits (382), Expect = 6e-40
Identities = 70/124 (56%), Positives = 90/124 (72%)
Frame = +1
Query: 103 SVPDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVXLIKQRLSNVKHKIL 282
+VP +AP+HCPG SE+AG ASAC GCPNQ ICAS + DP + L+ +RL +KHKIL
Sbjct: 6 TVPLDAPEHCPGPSSENAGTASACEGCPNQQICASAPRGE-DPDLPLVVERLKEIKHKIL 64
Query: 283 ILSGKGGVGKSTVTSLIGHGLASMSPDIXVXILDADICGPSQPRVLGVRGEQVHNSGSGW 462
+LSGKGGVGKST +S + GL S+ D + ++D DICGPS PR++GV E+ H S GW
Sbjct: 65 VLSGKGGVGKSTFSSQLAWGL-SLEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGW 123
Query: 463 SPVY 474
SP+Y
Sbjct: 124 SPIY 127
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 69.7 bits (163), Expect = 2e-13
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Frame = +1
Query: 256 LSNVKHKILILSGKGGVGKSTVTSLIG---HGLASMSPDIXVXILDADICGPSQPRVLGV 426
+ V+H IL+LSGKGGVGKS+VT+ + H S + ILD D+ GPS PR+ G
Sbjct: 1 MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGK 60
Query: 427 RGE--QVHNSGSGWSPVY 474
E ++H S +GW PVY
Sbjct: 61 DAERNRIHQSSAGWVPVY 78
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 28.7 bits (61), Expect = 0.48
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 226 DPAVXLIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDIXVXILD 384
DP ++ L K + + GKGGVGK+T + + ++ + + + D
Sbjct: 4 DPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 229 PAVXLIKQRLSNVKH-KILILSGKGGVGKST--VTSLIGHGLASMSPDIXVXI 378
PA ++ + ++H +++++SG+ G GKST V ++ H L+S D+ +
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVV 630
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 286 LSGKGGVGKSTVTSLIGHGLASMSPDIXVXILDADICGPSQPRVLGV 426
L+G+ G+GKST+ + ++ I + ++ ++ G P + V
Sbjct: 213 LTGRNGIGKSTLLRALSRREIAIPTHITILHVEQEMTGDDTPALQSV 259
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 274 KILILSGKGGVGKSTVTSLIGH 339
+I++L+G G GK+T+ +I H
Sbjct: 417 RIMMLTGLAGAGKTTLAHVIAH 438
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 116 TRRNIALELKARMLVKLQPVLDAL 187
++RNI L L+ RM++++ P D+L
Sbjct: 2054 SKRNILLNLEHRMMLQMAPDCDSL 2077
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 271 HKILILSGKGGVGKSTVTSLI 333
+K ++LSG G+GK+T L+
Sbjct: 409 YKAVLLSGPPGIGKTTAAHLV 429
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 262 NVKHKILILSGKGGVGKSTVTSLIGHGL 345
N+ H L++SG G+GK+T + H L
Sbjct: 53 NMPH--LVISGMPGIGKTTSILCLAHAL 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,139
Number of Sequences: 5004
Number of extensions: 36761
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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