Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27k06
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 28 1.4
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 28 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.4
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 27 2.5
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 3.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 4.3
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.3
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.7
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 26 5.7
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 5.7
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 7.5
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 7.5
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 25 7.5
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 7.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 9.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.9
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 9.9
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 254 DEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHE 421
D + I + ND+ Q ++ + SNR +S Y V D VT S L +
Sbjct: 260 DSSSSIVEGFENDLSPSQVTLNESSIISSNREEESFYSVHDSVTQKKTRTSWLIFQ 315
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 27.9 bits (59), Expect = 1.4
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = +2
Query: 254 DEAKQIRDKISNDIQK----MQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHE 421
D+ ++ DK+ N+I+K ++E V A+ + ++D TS + ++ HE
Sbjct: 111 DKVRKSSDKLINEIEKTKSSLREDVKTALSEVRLNLNLEKGRMKDAATSRNTNI----HE 166
Query: 422 AITKATSCVSDRLKEANDQ-------ILGFTAIVNNAV 514
TK + V KE ND GF +V++ V
Sbjct: 167 NETKILNEVDILHKEINDMKIQTNQWFTGFVGVVSSVV 204
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.4
Identities = 25/101 (24%), Positives = 42/101 (41%)
Frame = +2
Query: 194 LQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVR 373
LQK E+ + S LQ EAK+ + IQ++ +T + N + D +R
Sbjct: 1486 LQKLHSESLSLMENIKSQLQ-EAKEKIQVDESTIQELDHEITASKNNYEGKLNDKDSIIR 1544
Query: 374 DCVTSHSNDVSALFHEAITKATSCVSDRLKEANDQILGFTA 496
D S ++ L + + + S V E +IL F +
Sbjct: 1545 DL----SENIEQL-NNLLAEEKSAVKRLSTEKESEILQFNS 1580
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 173 IEDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVEN 334
IED N K +D NG + + +A++ DK+ N +K + + AVEN
Sbjct: 652 IED-KSNGSKGVSATKDVSNGKPAETKSKARKFFDKLFNRRKKRKLNKAAAVEN 704
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 460 ETIAHAARCFCYCLVKQGTNVV 395
E++ +AARCF + L K G N++
Sbjct: 155 ESLENAARCFDFVLQKSGGNIL 176
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 251 QDEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVR 373
QDEA + D+I +I + + + V ++ TD+ VR
Sbjct: 17 QDEANDVVDRIVEEIVTDRMGIVDLVTSIGEYLTDNNISVR 57
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 230 NGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSND 400
N F L + AKQ D I + + ++QE N + N + + C++S D
Sbjct: 261 NTFLGELFNAAKQTSDSIDDIVAQIQEDDENFENELDNFHRSARNLCKICISSAQED 317
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +2
Query: 443 CVSDRLKEANDQILGFTAIVNNAVQSSSKALDDMRKCTQEGSFLTTGSCLGSVALNAETK 622
C+ D + N IL I+ N QSS +A+ +++ SF S +N+
Sbjct: 305 CIEDLHESVNLDILCLKDILRNIAQSSKEAMYIVKRHNSSQSFYGNRSTTNFSIINSGLY 364
Query: 623 LVSFTAQSAI 652
L A++ +
Sbjct: 365 LKKDAAKNLL 374
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 161 TRKLIEDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQES 313
T + E + + L+KATD + + F + + + N IQK +ES
Sbjct: 338 TLSVSEHWEDLLRKATDSCQKELEAFEEISNLRVLAVENSLGNLIQKAEES 388
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 5.7
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 7/216 (3%)
Frame = +2
Query: 44 KELTLSFLVLALICASLGNPADAYHPAILGQRELDLYGNTRKLIEDFVENLQKATDEARD 223
KEL LAL+ SL +L +L T L+++ VEN + +++
Sbjct: 3 KELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNSQN 62
Query: 224 AINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSNRFTD-SGYGVRDCVTSHSND 400
+ GF + +K + + M V+ +R T SG+G T D
Sbjct: 63 GVAGFNT-----SKPVHIDFTPGNLVMARWVSGDYLFYPSRITAVSGFGANKKYTVQFLD 117
Query: 401 VSALFHEAITKATSCVSDRLK--EANDQIL-GFTAIVNNAVQSSSKALDDMRKCTQEGSF 571
+ ++ + ++ + E N +IL T I + V+ +KA+ T ++
Sbjct: 118 YPDIETVSLKHIKAMPEEKRQEIEGNKEILKKSTTIRSTPVREPTKAISVASMSTSPSNY 177
Query: 572 LTTGS---CLGSVALNAETKLVSFTAQSAITTARIS 670
+ S S A+ A + AQ T +IS
Sbjct: 178 ASRASSPDMKSSAAVTANVSPIQNVAQHVSTLPKIS 213
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 176 EDFVENLQKAT--DEAR--DAINGFTSGLQDEAKQIRDKISNDIQKMQE 310
E FV +LQ++T D +R D N +QDE KQ++ + I +QE
Sbjct: 20 EKFVRHLQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQE 68
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.5
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +2
Query: 287 NDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHEAITKATSCVSDRLKE 466
ND+ +E V N SN ++ G V V HS+ S F S+ L
Sbjct: 435 NDLMDEEEVVEN-----SNMYSIPGKTVATTVC-HSSSSSGDFSALSCHRNLSFSESLPT 488
Query: 467 ANDQILGFTAIVNNAVQSSSKAL 535
A DQ+ V+ + +SSS AL
Sbjct: 489 AEDQVHNNHCAVSPSRRSSSNAL 511
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 326 VENMSNRFTDSGYGVRDCVTSHSNDV 403
+ N+SN F S ++CV SH +++
Sbjct: 8 IRNVSNEFNFSFQSFKECVLSHGSNL 33
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 512 VQSSSKALDDMRKCTQEGSFLTTGSC 589
V S + ++D+MR+C + G ++ C
Sbjct: 186 VHSFTGSIDEMRRCIEHGLYVGVNGC 211
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -2
Query: 328 YSVCDAFLHFLY---IV*DF-VPDLLCFIL*SRCEPIDGISGFICCFLQIFHEVFN 173
+ C AFLH++Y + + LC +L C+ +G+ F + + H V N
Sbjct: 509 FETCSAFLHYIYCGTLNGSYCTAKNLCNLL-ILCKGFEGLETFFAYIVHLLHGVLN 563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.5
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 8/137 (5%)
Frame = +2
Query: 284 SNDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHEAIT-----KATSCV 448
S + + TN + S +T + + +S S VS IT K TS
Sbjct: 578 STPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSST 637
Query: 449 SDRLKEANDQILGFTAIVNNAVQSSSKALDDMRKCTQEGSF---LTTGSCLGSVALNAET 619
S L N FT+ + + SSS A ++ SF +TT S S +
Sbjct: 638 SIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTS 697
Query: 620 KLVSFTAQSAITTARIS 670
+FT S IT++ +S
Sbjct: 698 FPSTFTT-SFITSSSLS 713
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 411 RALTSLLCDVTQSRTPYPESVNLLDIFSTA 322
+ L SLL D ++ PE+VNL D A
Sbjct: 728 KVLKSLLVDAEKAMLTTPETVNLRDFVQNA 757
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 176 EDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVE 331
E F E +Q + A+N +GL E KQ+ + I+ D +++ +A E
Sbjct: 1038 ESFRERMQILKSKY-GALNAERAGLLGECKQLENSITKDKEELNMEFKDADE 1088
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/67 (19%), Positives = 31/67 (46%)
Frame = +2
Query: 164 RKLIEDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSN 343
R I + +L K R + G + LQ+E ++ +D+ ++ ++++ N ++ +
Sbjct: 47 RNKIAGYTTHLMKRIQ--RGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
Query: 344 RFTDSGY 364
GY
Sbjct: 105 MLKALGY 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,589
Number of Sequences: 5004
Number of extensions: 56455
Number of successful extensions: 218
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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