Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27k02
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 27 1.9
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 2.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.3
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 26 5.7
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 26 5.7
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 5.7
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 7.6
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 10.0
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 10.0
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -2
Query: 632 VRLENRRSHSASVINIVANRYRLVYRDPGFNSIREQREHDPSVVLKPVDYQRIHPA 465
V L+ +RS + +NI A R V D SIR + H PSV+ K + +I A
Sbjct: 148 VVLDPKRSLESPYVNIGAFRTYPVGND---GSIRTKSRHHPSVLFKNLPSSKIEDA 200
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 42 LLCSVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMD 206
LL + G N P K G+ SAS++ + AW++ K S R T E D
Sbjct: 496 LLQELISGINQKQKPSHKRGSLSASHKRDAAWSLLYKATSNKSRPTTTSTELKTD 550
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/61 (19%), Positives = 24/61 (39%)
Frame = +3
Query: 474 NPLIVDWFEDYARVVFSLFADRVKTWVSINEPVSICDYVYNTGGMAPPIFEPHVAPYVCT 653
NPL + W +++ F +TW + + C ++ A + + P +C
Sbjct: 5 NPLFLQWIQEWMEESTRRFPKSYQTWRKAYDSMKSCPITFHRPSQALAL--KGIGPTICA 62
Query: 654 K 656
K
Sbjct: 63 K 63
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 366 YYNNLIDGLLDKGIEPLVTIFHWD---LPQSLQDLGGWMNPLIVDWFE 500
YY+ DG +D I+P + F +D + +++++L ++ + WF+
Sbjct: 4665 YYDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWFQ 4712
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 503 VLKPVDYQRIHPATKILQTL 444
VLKPV Y++I KILQ L
Sbjct: 73 VLKPVKYKKIKREIKILQNL 92
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 211 VRSIIASGLVWTSRSHMLSPLSLTFQAPS-TWYEAD 107
+ +I++G W++ S + ++ F+APS YEAD
Sbjct: 74 IMGVISTGFAWSAYSLVKKYIAPMFRAPSQNAYEAD 109
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 51 SVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIW 167
S +G++L+F AS+S +E SDK SIW
Sbjct: 298 SSCFGNSLSFAASNGVDGASSSQVLENILVASDKEFSIW 336
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 192 EAIM-DLTNGDVTCDSYHLWERDIEMATELGLHFYRFSLSWPRLM 323
EAIM DL D+ D E D+ +A HF+ FS +PR +
Sbjct: 299 EAIMSDLNFEDI--DEKKFEEIDLRLACCFESHFFAFSQHYPRYL 341
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 251 ERHRNGNGAWSTFLP 295
ERH++ N WST LP
Sbjct: 141 ERHKSTNDTWSTNLP 155
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 510 RVVFSLFADRVKTWVSINEPVSICDYVYNTGGMAPPIFEP 629
R++ F D+V +SI VS+ +Y T G PP +P
Sbjct: 227 RLMLEAFKDKVLILLSIAAVVSLALGLYQTFGQ-PPTLDP 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,412
Number of Sequences: 5004
Number of extensions: 62719
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -