Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27j19
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   3.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   3.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   4.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 93  PILVADLNLKTTVEYSINSDVVFLFGSLT 7
           P+LV    ++  + + I  DV  +FGS++
Sbjct: 111 PMLVISSFMERMIGWEIGCDVYSVFGSIS 139


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 93  PILVADLNLKTTVEYSINSDVVFLFGSLT 7
           P+LV    ++  + + I  DV  +FGS++
Sbjct: 111 PMLVISSFMERMIGWEIGCDVYSVFGSIS 139


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 190 GFFMIAKRTVKLLIQCLGSLSFW 122
           GFFM+      +LI  +  +SFW
Sbjct: 232 GFFMMDYYIPSILIVVISWVSFW 254


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 111 GSHHQNERLPRHWISNLTVRFAI 179
           G HHQN   P   +S+ +   A+
Sbjct: 172 GHHHQNGATPSSLVSSASASSAV 194


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = +2

Query: 146 LDQQFNCPFCNHEKSCEVKMDR 211
           +++   CP+C    SC   + R
Sbjct: 2   INEPQECPYCRRNFSCYYSLKR 23


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 254 DFQTTTNVLSEPIDVY 301
           D +  T + SEPID Y
Sbjct: 249 DHKMLTPIKSEPIDAY 264


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +2

Query: 173 CNHEKSCEVKMDRARNTARIQCRVCL 250
           C +  +CE+ M   R     + + CL
Sbjct: 223 CKYGNNCEIDMYMRRKCQECRLKKCL 248


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +2

Query: 173 CNHEKSCEVKMDRARNTARIQCRVCL 250
           C +  +CE+ M   R     + + CL
Sbjct: 20  CKYGNNCEIDMYMRRKCQECRLKKCL 45


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 190 GFFMIAKRTVKLLIQCLGSLSFW 122
           G+F+I      +LI  L  +SFW
Sbjct: 245 GYFLIQVYVPCVLIVVLSWVSFW 267


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 352 FKNSYLIRTFTSIHPVIIYIYWL 284
           F N+  I    S+H V + +Y L
Sbjct: 564 FSNTLWILVMVSVHVVALVLYLL 586


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 78  QQQVWDVENQKGSHHQNERLPRHW 149
           QQQ    + Q+    Q ++  +HW
Sbjct: 441 QQQQQQQQQQQQQQQQQQQQQQHW 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,968
Number of Sequences: 438
Number of extensions: 1615
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)