Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27j15
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001118-1|AAH01118.1| 224|Homo sapiens transmembrane protein 1... 206 8e-53
Y18007-1|CAA77013.1| 224|Homo sapiens seven transmembrane domai... 198 1e-50
BC057784-1|AAH57784.1| 519|Homo sapiens FLJ14803 protein protein. 31 2.9
BC045618-1|AAH45618.1| 561|Homo sapiens FLJ14803 protein protein. 31 2.9
AK074732-1|BAC11168.1| 561|Homo sapiens protein ( Homo sapiens ... 31 2.9
AK027709-1|BAB55314.1| 561|Homo sapiens protein ( Homo sapiens ... 31 2.9
AK027678-1|BAB55289.1| 203|Homo sapiens protein ( Homo sapiens ... 31 2.9
DQ644568-1|ABG29111.1| 203|Homo sapiens sigma-1 splice variant ... 30 8.9
>BC001118-1|AAH01118.1| 224|Homo sapiens transmembrane protein 147
protein.
Length = 224
Score = 206 bits (502), Expect = 8e-53
Identities = 95/200 (47%), Positives = 134/200 (67%)
Frame = +3
Query: 78 MTLYHFGNCLALIYAPYHMAYKYSGISEYASFSKCVYAGGLYIFTQLCKMLLLATFFPDS 257
MTL+HFGNC AL Y PY + YK SG+SEY +F KCV AG Y+F QLCKML LATFFP
Sbjct: 1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTW 60
Query: 258 DSSPVEGEYNVILEILKSTVDFADLLGIYFALNSVPGKGHAKILTSAIGWASAELVVTRT 437
+ G Y+ I E +K++VD ADL+G+ ++ GKG KI+ +A+GWA+AEL+++R
Sbjct: 61 EG----GIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRC 116
Query: 438 VLLWVGARGSEFDWRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALT 617
+ LWVGARG EFDW+Y++ +SN++L+ + + VW+ TR DL P V+ L+ L+
Sbjct: 117 IPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLS 176
Query: 618 PYRALIEEAIGSIFHLCAWA 677
Y+A + E + L +WA
Sbjct: 177 VYKAFVMETFVHLCSLGSWA 196
>Y18007-1|CAA77013.1| 224|Homo sapiens seven transmembrane domain
protein protein.
Length = 224
Score = 198 bits (484), Expect = 1e-50
Identities = 93/202 (46%), Positives = 133/202 (65%)
Frame = +3
Query: 78 MTLYHFGNCLALIYAPYHMAYKYSGISEYASFSKCVYAGGLYIFTQLCKMLLLATFFPDS 257
MTL+HFGNC AL Y PY + YK + +SEY +F KCV AG Y+F QLCKML LATFFP
Sbjct: 1 MTLFHFGNCFALAYFPYFITYKCTDLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTW 60
Query: 258 DSSPVEGEYNVILEILKSTVDFADLLGIYFALNSVPGKGHAKILTSAIGWASAELVVTRT 437
+ G Y+ I E +K++VD ADL+G+ ++ GKG KI+ +A+GWA+AEL+++R
Sbjct: 61 EG----GIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRC 116
Query: 438 VLLWVGARGSEFDWRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALT 617
+ LWVGARG EFDW+Y++ +SN++L + + VW+ TR DL P V+ L+ L
Sbjct: 117 IPLWVGARGIEFDWKYIQMSIDSNISLGPYIVASAQVWMITRYDLYHTFRPAVLLLMFLR 176
Query: 618 PYRALIEEAIGSIFHLCAWALV 683
Y+A + E + L +WA++
Sbjct: 177 VYKAFVMETFVHLCSLGSWAVL 198
>BC057784-1|AAH57784.1| 519|Homo sapiens FLJ14803 protein protein.
Length = 519
Score = 31.5 bits (68), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 343 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 197
Y PSRS ++ F+ S +T YSP LS G + + S V YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190
>BC045618-1|AAH45618.1| 561|Homo sapiens FLJ14803 protein protein.
Length = 561
Score = 31.5 bits (68), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 343 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 197
Y PSRS ++ F+ S +T YSP LS G + + S V YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190
>AK074732-1|BAC11168.1| 561|Homo sapiens protein ( Homo sapiens
cDNA FLJ90251 fis, clone NT2RM4000115. ).
Length = 561
Score = 31.5 bits (68), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 343 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 197
Y PSRS ++ F+ S +T YSP LS G + + S V YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190
>AK027709-1|BAB55314.1| 561|Homo sapiens protein ( Homo sapiens
cDNA FLJ14803 fis, clone NT2RP4001442. ).
Length = 561
Score = 31.5 bits (68), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 343 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 197
Y PSRS ++ F+ S +T YSP LS G + + S V YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190
>AK027678-1|BAB55289.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ14772 fis, clone NT2RP3004332. ).
Length = 203
Score = 31.5 bits (68), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 343 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 197
Y PSRS ++ F+ S +T YSP LS G + + S V YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190
>DQ644568-1|ABG29111.1| 203|Homo sapiens sigma-1 splice variant
protein.
Length = 203
Score = 29.9 bits (64), Expect = 8.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 477 WRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALTPYRALIEEAIGSI 656
W R A + + L A +VWLW D S ++V L L P L +E + +
Sbjct: 3 WAVGRRWAWAALLLAVAAVLTQVVWLWLGLDHELAFSRLIVELRRLHPGHVLPDEELQWV 62
Query: 657 F 659
F
Sbjct: 63 F 63
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,196,573
Number of Sequences: 237096
Number of extensions: 2332543
Number of successful extensions: 8704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8702
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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