Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27j07
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.47 
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    29   0.47 
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   2.5  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   2.5  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   4.4  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    26   5.8  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   5.8  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    25   7.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.7  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   7.7  

>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 416 ETTDKKGKKSIRQTKRENYLKRQAQAAELSKNQLKSQCLSYLSQWKHDKQNW 571
           E+ D+    SI + K ENY+     +  +S+N  +    +Y+S+  +  Q+W
Sbjct: 153 ESMDQSAPPSITEDKGENYISSNHSSMHISRNDSR----NYMSEKPNKDQSW 200


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 577 ELPVLFVMFPLRKIAETLRFELIF*KFCSLGLTFKIVFSLC 455
           E+PV   ++PL K  +  +  L+  ++C+L +T K   S C
Sbjct: 203 EIPVNITLYPLLKGLDVGKVTLVLKEYCTLFITSKAYSSTC 243


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 372 KKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPKL 494
           +K R+  K++   L  Q I+  K  Y+K RE+ +  V PKL
Sbjct: 226 EKFRLYHKQEKYSLLMQEIENAKKLYEKDRER-LAKVNPKL 265


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 342 SDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVK 440
           S +T  TP +K ++ K+KRK     + +++K K
Sbjct: 76  SSHTFQTPTKKGNKTKKKRKKEKKKETIVEKNK 108


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 370 CIGVINVLS----LNCRRFRFNFIVLLVSFCFLF 281
           C+  +++LS    +NC  F  N+ +LLVS  F F
Sbjct: 68  CMSTVSLLSSAHKMNCCNFYSNYNILLVSSLFFF 101


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 467 NYLKRQAQAAELSKNQLKSQCLSYLSQWKHDKQNWKFMKVKQLWLLKNKFSTNLVPDESW 646
           N LK   +   L K  LK  C++ LS+    +       V  L+L  N  +   + DE+W
Sbjct: 378 NSLKNIFEEDNLGKTSLK--CVTILSRMFKQRNYDVLPDVYDLFLSVNILNDMKIKDEAW 435

Query: 647 QTLIEYFESAK 679
           Q     F+  K
Sbjct: 436 QDDTTNFKKRK 446


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 336 QLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPK 491
           Q S++      +KK + +RK   P     L  K KS +DK R+KT +  + +
Sbjct: 102 QKSNSKESHAQRKKLQKERKAMKPFADTSL--KAKSLWDKLRQKTSIKAEER 151


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 429 KKVKSRYDKQREKTILNVKPKLQNFQKINSNLSVSAIFLSGNMTNKTG 572
           K VK R +KQR   I     + QN  K+N+ L+    +    +  KTG
Sbjct: 439 KIVKERLEKQRASKI-----RSQNRPKVNAGLASRLSYQENKLRKKTG 481


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 429 KKVKSRYDKQREKTILNVKPKLQNFQKINSNLSVSAIFLSGNMTNKTGSS 578
           KK K    K+++K  LNV PK+ ++ +     S+   ++   +   TG S
Sbjct: 69  KKRKKLSSKEKKKLQLNVVPKIADYSQFKHLHSMWCSYILEVIAGCTGES 118


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 482 QAQAAELSKNQLKSQCLSYLSQWKHDKQNWKFMKVKQLW 598
           Q Q A L+  Q+ S CLS+L+      + W  + + QLW
Sbjct: 612 QGQLACLNP-QVLSHCLSHLNSPDSLLRQWACLCISQLW 649


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 356 DDSDAEETPRXXXXXXPVITETTDKKGKKSIRQTKRENYLKRQAQAA 496
           +D++ + TP        +++E   KKG K I   K     +R+A+ A
Sbjct: 748 EDTNNQSTPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRA 794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,361
Number of Sequences: 5004
Number of extensions: 37997
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)