Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27j06
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    41   9e-06
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.6  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   6.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 41.1 bits (92), Expect = 9e-06
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
 Frame = +1

Query: 313 VALVTGGSSGLGKATAELLVKQGGRVVICDLPSTKGQNTAKSL-GENAVFAPV--DVTSE 483
           VALVTG +SG+GK   E LV +G +V+       K +   + L  +     P+  D++++
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQ 68

Query: 484 DDVKEALQITLDKFGRLDALINCAGVASASRVYN---FKKEQPFDLNIFQNTIQV 639
           +D+ + ++      G +D LIN A +     + N      ++ FD+N+   T  +
Sbjct: 69  NDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 499 PPSHHLPKLHQQVQTLHSRQ 440
           PP HH     Q +Q LH RQ
Sbjct: 349 PPHHHHHHQTQSLQHLHYRQ 368


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 154 HVVTYIGYTYLLTF 113
           HV+ +IG+ +L+TF
Sbjct: 59  HVMIWIGFGFLMTF 72


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 72  PNTFTKIFQSPINTNLIITTD 10
           PN    IF++ I TN+  T+D
Sbjct: 79  PNAMKTIFKNTIFTNVASTSD 99


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 341 PDDPPVTKATRPCDIK 294
           PDDPP+    + C+ K
Sbjct: 428 PDDPPIGCECKTCNSK 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,297
Number of Sequences: 438
Number of extensions: 4123
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)