Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27j04
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    36   0.004
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    29   0.50 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.5  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    28   1.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.7  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    25   8.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.2  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 24/100 (24%), Positives = 42/100 (42%)
 Frame = +2

Query: 137 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICP 316
           +SG L K+TN   G++ RWF ++   GVLSYY       +       RG  +L  A +  
Sbjct: 257 MSGYLKKWTNYKSGYKLRWFTLN--NGVLSYYKNQDDASS-----ACRGSINLKLARLVH 309

Query: 317 SDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAE 436
             +    F +         ++A      ++W+  + +  E
Sbjct: 310 DPKQPTVFQVIGKGSVRYSVKANSPVEAKKWIAAISSAIE 349


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +2

Query: 137 LSGQLYKYTNVV-KGWQQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVIC 313
           +SG L K      +G+ +R+F ++   G +SYY  +            RG+  L+ AVI 
Sbjct: 152 ISGTLLKKRRKKGQGYARRYFTLNMVEGTISYYANEN-------SSVMRGKIPLSIAVIS 204

Query: 314 PSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAEIHTKVMGANPPLQPREQLA 493
            + E   T  IN  SG  ++L    A   Q+W+    A+ +       +   +  R Q +
Sbjct: 205 VAAE---THEINVDSG--VELWNLRAHTHQDWLRWCNALEKAKNSQTSSKLVVDERTQES 259

Query: 494 VHDAMASARQQLQ 532
             + + S   +L+
Sbjct: 260 SSNQLVSIYSRLR 272


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 467  PLQPREQLAVHDAMASARQQLQATELSDAALARCIES 577
            P+   EQL VHD +      L+++E   A   RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 278 WPAVQAVLCLLVHHKDNKIEHQSQDQQQTIFAAIPSPHLCIYTID 144
           W A+  +    + H D+++        +   AA  +PH+ +Y I+
Sbjct: 25  WEALSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDIN 69


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 293  LAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEW 409
            L  + I  S ED+    ++C S  M KLR+T     + W
Sbjct: 1489 LVQSAIRESSEDAIALAVDCDSEAMEKLRSTTTLDEESW 1527


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +2

Query: 470 LQPREQLAVHDAMASARQQLQATELSDAALARCIESSDSPFPHTDPDLLLLKATSAASMQ 649
           L     L  H +   + + L+  ELS       + +S  P  + D  +LLL     A   
Sbjct: 612 LHSLSHLLHHPSTKRSHKMLEGKELSQELEDLSLHNSPDPIIYKDELVLLLPPREIAKQL 671

Query: 650 CLLQCLGVLH 679
           C+L+     H
Sbjct: 672 CILEFQSFSH 681


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 343 GEGLGVFVAWAYHCCS 296
           G  + VF AWA +CCS
Sbjct: 138 GAAVRVFPAWAAYCCS 153


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 308 ICPSDEDSKTFTINCASGDML 370
           +CPS   S  F++NC +G M+
Sbjct: 62  LCPSLVGSMAFSMNCGAGGMV 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,676
Number of Sequences: 5004
Number of extensions: 49496
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)