Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27j04
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.31 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.31 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 272 AVQAVLCLLVHHKDNKIEHQSQDQQQTIFAA 180
           A  AV CLL HH+D  +   S  +   I  A
Sbjct: 529 ATMAVACLLFHHRDTPVVRASGRELTIILLA 559


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 272 AVQAVLCLLVHHKDNKIEHQSQDQQQTIFAA 180
           A  AV CLL HH+D  +   S  +   I  A
Sbjct: 619 ATMAVACLLFHHRDTPVVRASGRELTIILLA 649


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 242 HHKDNKIEHQSQDQQQTIFAAI 177
           HH+D+  EH S  ++   F+++
Sbjct: 106 HHQDSSSEHASNQERFGYFSSL 127


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 61 RSFCNHCIH 35
          R+FC +CIH
Sbjct: 32 RAFCRNCIH 40


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 61  RSFCNHCIH 35
           R+FC +CIH
Sbjct: 480 RAFCRNCIH 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,928
Number of Sequences: 438
Number of extensions: 3438
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)