Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27i16
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   7.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 105 HIYPHSIIIITYPHFIYKNP 46
           H++ H ++    P+ +Y+NP
Sbjct: 75  HLHHHQVLYQQSPYLMYENP 94


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 384 VIYSLQRLF*HGNNPYLNKYVTHHEHL*TNMNKV 283
           +I SL   + + NN Y   Y  +++ L  N+N +
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 384 VIYSLQRLF*HGNNPYLNKYVTHHEHL*TNMNKV 283
           +I SL   + + NN Y   Y  +++ L  N+N +
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 384 VIYSLQRLF*HGNNPYLNKYVTHHEHL*TNMNKV 283
           +I SL     H NN Y N    +++ L  N+N +
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 384 VIYSLQRLF*HGNNPYLNKYVTHHEHL*TNMNKV 283
           +I SL   + + NN Y   Y  ++  L  N+N +
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYI 114


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 157 IFLLLKNVIARDA*PLFCCRNILNSGKLLSLKLF 258
           +  ++ NV+       F C++I ++  L  LKL+
Sbjct: 10  VLFVIINVLLHGQVICFVCKDITSTSALYRLKLY 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,292
Number of Sequences: 438
Number of extensions: 3520
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)