Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27i11
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   3.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   9.0  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 233 NYNNEQMILNLN 198
           NYNN+++  N+N
Sbjct: 320 NYNNKKLYYNIN 331


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 77  SSDK*CNVK*YFHHC 121
           S D  CN   ++HHC
Sbjct: 462 SVDALCNTLHHWHHC 476


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 268 VLFYDHFINNILTIIM 221
           V+F   F+ NI+T I+
Sbjct: 42  VIFVTGFVGNIITCIV 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,850
Number of Sequences: 438
Number of extensions: 1109
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)