Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27i06
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 177 1e-45
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 46 7e-06
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 45 9e-06
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 31 0.21
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 30 0.36
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 29 0.83
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 28 1.1
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 28 1.5
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 27 2.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 4.4
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 26 4.4
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 5.9
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 7.8
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 25 7.8
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 25 7.8
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 7.8
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 177 bits (431), Expect = 1e-45
Identities = 83/201 (41%), Positives = 127/201 (63%), Gaps = 3/201 (1%)
Frame = +3
Query: 3 EILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGD- 179
EI+VT+GA E +S ++ GDEVI++EP+FD Y + GGVP ++ + P +G
Sbjct: 96 EIVVTAGANEGFFSVFAAFLNPGDEVIVMEPFFDQYISNITMNGGVPVYVPIIPPEEGSV 155
Query: 180 -DISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELELIADLCKKHNVLCLS 356
+S+ W LD +L + +TKMI++NTPHNPLGK+F++ EL IADL KHN+L +S
Sbjct: 156 KPVSAGAWKLDMNKLRNAITEKTKMIVINTPHNPLGKIFSEEELNEIADLVLKHNLLVVS 215
Query: 357 DEVYEWMVYEPKQHIRIASF-PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQV 533
DEVY+ + + P +R+A+ P +++ +TVGS GKTF TGW++GW G L++
Sbjct: 216 DEVYDRLSFVP--FVRLATLRPELFKHVVTVGSGGKTFGCTGWRVGWLIGDESLIKYSAA 273
Query: 534 VHQNCVYTCCTPVEEAVARSF 596
H + +P +EA+A +F
Sbjct: 274 AHTRICFAVNSPCQEALAIAF 294
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 45.6 bits (103), Expect = 7e-06
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Frame = +3
Query: 210 EAELASLFNNRTKMIIVNTPHNPLGKVFTQRELELIADLCKKHNVLCLSDEVYEWMVYEP 389
EA+LASL NR K+I + ++ G V E I DL KK+ + DEV+ +Y P
Sbjct: 296 EAKLASLPLNRPKIIAFESVYSMSGNVAPISE---ICDLAKKYGAITFLDEVHAVGMYGP 352
Query: 390 KQHIRIASFPGMWERT-ITVGSAGKTFSVTGWKIGWAYGPADLMRNL 527
+ PG+ R I G+ K++ G I + D++R+L
Sbjct: 353 RGAGVAEETPGLLSRVDIITGTLAKSYGCVGGYIAASSTLVDMIRSL 399
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 45.2 bits (102), Expect = 9e-06
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Frame = +3
Query: 3 EILVTSGAYEA--LYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQG 176
+I +TSGA A L T++ T D V++ P + Y + G +L +
Sbjct: 165 DIYLTSGASHAARLIMTLIIARPT-DGVMVPAPQYPLYGAQIDLMSGSMVSYSLSEENNW 223
Query: 177 D-DISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELELIADLCKKHNVLCL 353
D D DEA + ++ +V P NP G ++ +E + K ++ L
Sbjct: 224 DIDFDQFKKSFDEASKKGI---NVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIVLL 280
Query: 354 SDEVYEWMVYEPKQH 398
+DEVY+ +Y+ K H
Sbjct: 281 ADEVYQNNIYQNKFH 295
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 30.7 bits (66), Expect = 0.21
Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Frame = +3
Query: 3 EILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGDD 182
+I +T+G L + V+ GD I+IE Y GV +FI + G
Sbjct: 126 DIKITNGNTIGLEYCLRLLVNRGD-CILIEKYTYPAAITAMRPLGV-KFIPIDMDENGML 183
Query: 183 ISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELELIADLCKKHNVLCLSDE 362
S + V++ + +SL + + T NP G T + L KK++++ + DE
Sbjct: 184 PESFEKVMETWD-SSLGARPHVLYTIPTGQNPTGSTLTLERRKKFLTLAKKYDIIIVEDE 242
Query: 363 VYEWMVYE--------PKQHIRIASF-----PGMWE-----RTITVGSAGKTFSVTGWKI 488
Y ++ E KQ I+SF P + R + V S K V G ++
Sbjct: 243 PYYFLQMEKYDANWKPDKQAFNISSFKKKLIPSLLHLDTDGRVLRVDSFSKLI-VPGLRL 301
Query: 489 GWAYG 503
GW G
Sbjct: 302 GWITG 306
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 258 VNTPHNPLGKVFTQRELELIADLCKKHNVLCLSDEVYEWM 377
+ T NP G + + I L +KH+++ L DE Y ++
Sbjct: 212 IPTGQNPTGSTLSVERRKQIYTLAQKHDIIILEDEPYYYL 251
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.83
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 33 ALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFI-ALKPKP 170
A Y +L H D + +I+I+P + F + GGVP + A+ KP
Sbjct: 595 AFYRHMLNHEDVNNSLIMIQPTLQSFSF--EHPGGVPVLLDAVSVKP 639
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 165 KPQGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRE 305
KP DD+ D +LD+ ++ S F N K I H G + E
Sbjct: 21 KPNFDDLDDLDDILDDLDVPSAFKNEEKKNI--DEHKQTGNTSKENE 65
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 538 CTTCRFLIRSAGPYAHPIFHPVTEN 464
C C + GP +H FH +TEN
Sbjct: 89 CLVCGRYFQGRGPSSHAYFHALTEN 113
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 306 LELIADLCKKHNVLCLSDEV 365
LE LCK HNVL ++DEV
Sbjct: 229 LEEAYKLCKAHNVLFIADEV 248
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 180 DISSADWVLDEAELASLFNNRTKMIIVNTPH 272
DI +++W+ +SL NRT +++ + H
Sbjct: 771 DIHTSNWIYKHCFQSSLMENRTVILVTHNVH 801
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 237 NRTKMIIVNTPHNPLGKVFTQRELEL-IADLCKKHNVLCLSDEVYEWMVYEPKQHIRIAS 413
N+ K+ + P +G + T E E + + ++ + +E + Y PK + +A
Sbjct: 226 NKLKLYLSTRPEEHIGSLDTWNEAENGLREALQESGETWIINEG-DGAFYGPKIDVMVAD 284
Query: 414 FPGMWERTITV 446
G W +T T+
Sbjct: 285 ARGKWHQTATI 295
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 493 HPIFHPVTENVFPADPTVMVLSHMPGNDAIR 401
H F PV + PT+ +LS + G DA++
Sbjct: 223 HAKFSPVATASYRLLPTIHILSPIEGEDAVK 253
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 261 NTPHNPLGKVFTQREL 308
N H P GK FTQREL
Sbjct: 54 NPIHEPNGKKFTQREL 69
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 213 PRLKPNPLMIYRRLEVSV 160
PR P+P+MI RR+E +
Sbjct: 749 PRFHPSPMMIKRRIEALI 766
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = -1
Query: 383 VHHPLVDFVGETKHIVLLAQIGNEFQLALGEHLAQRIVGRVHDD 252
+H +D++ + + + E G H+ + VGR+ DD
Sbjct: 81 LHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGRITDD 124
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 135 GVPRFIALKP-KPQGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELE 311
GV + L P +P +S A ++ A T IIVN + Q E E
Sbjct: 380 GVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKNTIQIIVNMMTRWVEAYLDQCENE 439
Query: 312 LIADLCKKHNV 344
L DL KH+V
Sbjct: 440 LSDDLLSKHSV 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,842
Number of Sequences: 5004
Number of extensions: 56307
Number of successful extensions: 204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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