Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27h09
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   4.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   4.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   4.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   4.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   4.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   5.8  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.8  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   SSVSSQS*FETLENYEKLQNY 65
           SS+S+++      NY+KLQ Y
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYY 103


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   SSVSSQS*FETLENYEKLQNY 65
           SS+S+++      NY+KLQ Y
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYY 103


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   SSVSSQS*FETLENYEKLQNY 65
           SS+S+++      NY+KLQ Y
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYY 103


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   SSVSSQS*FETLENYEKLQNY 65
           SS+S+++      NY+KLQ Y
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYY 103


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   SSVSSQS*FETLENYEKLQNY 65
           SS+S+++      NY+KLQ Y
Sbjct: 316 SSLSNKTIHNNNNNYKKLQYY 336


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 150 CEKINTACLSTHKLSHTYLPISKLLKYVCS 61
           CEK + +C++   L+      S + +Y C+
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQYRCA 48


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 7   PYPAKVNLKR*KIMKNY 57
           PY  ++ L+R KIMK Y
Sbjct: 88  PYEWQLILRRYKIMKYY 104


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 30  ETLENYEKLQNYTH 71
           ETL+ +  LQN+ H
Sbjct: 136 ETLQRHHHLQNHHH 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,540
Number of Sequences: 438
Number of extensions: 1680
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)