Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27h06
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.48 
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    28   1.1  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   5.9  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   7.9  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    25   7.9  

>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = -2

Query: 635 VIQDTQRVYSRFRDALDSGVQAVERSVSMKELVSHLTDRGPAIVLVDAGLL--SCDLCKH 462
           +IQ+  ++Y+   + +  G++A+ RSVS K L     D      L+D G+L  SC+  K 
Sbjct: 109 IIQNRLKMYA---ERVLFGIEALLRSVSPKPLGYISEDWKTRGRLIDTGILWESCE--KI 163

Query: 461 NKLGSEQ*VG 432
            KLGSE  VG
Sbjct: 164 EKLGSEGIVG 173


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 325 HKHRSPPSANPSLATKGSTSKLTHRHSPLSFSPDLSESRFRS 200
           HK  + P+A P L+   + +     H  +   PDLSE  F++
Sbjct: 60  HKPHAGPNAAPLLSASNADTTGLDSHYIIVLQPDLSEQEFQA 101


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 46  ELPSFFFLPMLIVIALRNYISFLWTC*LT 132
           +L +F F+P+++ +   N +S +WT  L+
Sbjct: 183 QLFNFTFVPLVLQVIFANAVSMVWTAYLS 211


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 409 IDTAAVFISQRPKRHYGSSRSLNGAFRY----HKHRSPPSANPSLATK 278
           ID     +   P++    S +L   + Y    H+HR+PPS++   AT+
Sbjct: 407 IDLINRMLEINPEKRISESEALQHPWFYTVSTHEHRTPPSSSEHEATE 454


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 441 IGRYTFLM*SKSIQRQYSYLSAPNVITDP 355
           +G  +F    ++IQR+     APNV+T P
Sbjct: 136 VGPLSFRKKERNIQRRERLQKAPNVLTQP 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,364
Number of Sequences: 5004
Number of extensions: 57202
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)