Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27h06
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 225 SGEKLSGLCLWVNLLVEPFVASEGLAEG 308
           S  +   + + V  ++EPF   EGL+EG
Sbjct: 598 SARRSGDVAVIVPPIIEPFTFQEGLSEG 625


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 462  VFAQVARQQTRI-HKYYSRAPISEV 533
            ++AQ    Q +I  +YY   PISEV
Sbjct: 937  IYAQPQTVQDQIVSEYYQNKPISEV 961


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 328 YHKHRSPPSANPSLATKGSTSKL 260
           YH +R P   N   A  G  S L
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 328 YHKHRSPPSANPSLATKGSTSKL 260
           YH +R P   N   A  G  S L
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/48 (20%), Positives = 20/48 (41%)
 Frame = -1

Query: 153 QHSWFEPRESTRPQEADIVSQGYHYQHR*KKKTRQFLVCAEHNQNSTH 10
           QH   +P++     +A       H QH   ++ +Q    ++ +Q   H
Sbjct: 175 QHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMH 222


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 662 T*SSYLLSFVIQDTQRVYSRFRDALDSGVQ 573
           T +S + S ++ DT++ + + RD+L   V+
Sbjct: 711 TRNSEMFSSLLSDTEQHFRQHRDSLSPRVE 740


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,459
Number of Sequences: 438
Number of extensions: 4106
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)