Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27g24
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   3.2  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   4.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   7.4  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   9.8  

>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 426 YIMKQDKPNDTRTLNCQNARFEIGKSERGPKVSGRNNL 313
           YI    +PN   TLN  N +F++  +++ P +S  N L
Sbjct: 202 YIGLPSQPNSITTLNNTNQKFQVPDNDK-PPMSSLNEL 238


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 342 GPKVSGRNNLVSLVVDYFSVS 280
           GPK  G++NLV  + DY+S++
Sbjct: 379 GPKGCGKSNLVHSLFDYYSLN 399


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 466 FVLLQCLEFVLNNNVAVKYCKQVLQIVLMINFI 564
           F+ +Q L   L N  AVK    +LQ +L+ N +
Sbjct: 130 FISIQFLNRYLPNTTAVKVVSWILQALLLFNLL 162


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 342 GPKVSGRNNLVSLVVDYFSVSPADGYI 262
           GP  SG++  +SL++ YFS +  + Y+
Sbjct: 469 GPSGSGKSTFISLLLRYFSPTYGNIYL 495


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 587 TETDLSITIKFIIKTICSTCLQY 519
           +ET + +T+   I T+C+TC  +
Sbjct: 563 SETSIQMTVSRSIHTLCTTCASH 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,763
Number of Sequences: 5004
Number of extensions: 48571
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)