Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27g24
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 111 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 215
           Q+    N  N NA N   D+Q+ N      ++D+R
Sbjct: 430 QNADNQNADNQNANNQNADNQNANKQNGNRQNDNR 464



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 126 DNQLNGNAENGGGDSQDHNSAEAPGRDDDR 215
           DN+ NGN +N  G+ Q+ N      ++D++
Sbjct: 487 DNKQNGNRQN--GNKQNDNKQNGNRQNDNK 514



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 126 DNQLNGNAENGGGDSQDHNS 185
           DN+ NGN +N   ++Q+ N+
Sbjct: 512 DNKRNGNRQNDNQNNQNDNN 531



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 129 NQLNGNAENGGGDSQDHNSAEAPGRDDDR 215
           N  N NA+N   D+Q+ N+  A  ++ ++
Sbjct: 426 NAGNQNADNQNADNQNANNQNADNQNANK 454



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 129 NQLNGNAENGGGDSQDHNSAEAPGRDDDR 215
           N+ N N  NG   + + N+     R+D++
Sbjct: 508 NRQNDNKRNGNRQNDNQNNQNDNNRNDNQ 536



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 126 DNQLNGNAENGGGDSQDHNSAE 191
           DNQ N N +N   D+Q H+S++
Sbjct: 522 DNQNNQN-DNNRNDNQVHHSSK 542


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 639 KSSYII*NAN*EKSTSRYRN*LINYNKIYH*NY--LQY 532
           K   II N N   +   Y N   NYN  Y+ NY  LQY
Sbjct: 77  KEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQY 114


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE 191
           NN+N   +   +N  N N  NG G S ++N+ +
Sbjct: 240 NNNNNNNNNNNNNGANDNG-NGNGASNNNNNGD 271



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 93  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 212
           N +  A +   +N  N N  NG  D+ + N A     + D
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 508 VAVKYCKQVLQIVLMINFIVIDKSVSVSRRTFFL 609
           V  K+C  V  + +  + +++ +    SRR  +L
Sbjct: 701 VPSKFCLSVTLLTVATSLVIVSRYAEKSRRMLYL 734


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 370 CVLTV*RSCIIWFVLFHNVN 429
           CVL   R+CI+   LF NV+
Sbjct: 37  CVLQANRACILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 370 CVLTV*RSCIIWFVLFHNVN 429
           CVL   R+CI+   LF NV+
Sbjct: 20  CVLQANRACILIKDLFDNVH 39


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 117 ITTDNQLNGNAENGGGDSQDHNSAEA 194
           +T+ + +N N+ NG  +S   +S+ A
Sbjct: 532 LTSSSNVNNNSGNGNTNSSARDSSPA 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,640
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)