Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f24
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   1.7  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   1.7  
SPAC13F5.07c |||previusly annotated as dubious, may not be prote...    24   2.9  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   2.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    24   2.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    24   3.8  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   5.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    23   5.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    23   6.7  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    23   6.7  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    23   8.9  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    23   8.9  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +1

Query: 94  SHSFIIINTNNPNHKCKNTSQSRTSVKNSNFLTDLTFLIFAR*LTLFFSF 243
           S + II +T+  ++K K  S     +KN++ ++    ++ +  ++LF+ +
Sbjct: 76  SENAIITSTSTESNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFY 125


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 55  TSSRKHGVLTSAYSHSFIIINTNN--PNHKCKNTSQSRTSVKN 177
           T  +K  V  S+Y  S I  N N   P+ +C+N SQS  + +N
Sbjct: 72  THKKKKSV--SSYLSSTIQKNANENIPHVQCRNDSQSTVTTRN 112


>SPAC13F5.07c |||previusly annotated as dubious, may not be protein
           coding|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 223 VNARKLKTSSPSK 185
           VN++KLKTSSP K
Sbjct: 58  VNSQKLKTSSPPK 70


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 82  TSAYSHSFIIINTNN-PNHKCKNTSQSRTSVKNSNFL 189
           ++A +H+  +   N+ PNH  KN+  S +S + +NFL
Sbjct: 407 SNASNHTVSLGYLNDRPNHSKKNSVTSTSSSQFNNFL 443


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  HSFIIINTNNPNHKCKNTSQSRTSVKNSNFLT 192
           ++F I+NTN PN      ++S    ++  FL+
Sbjct: 5   NTFSILNTNEPNAGGSQVTESEIEEEDIEFLS 36


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 479

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 20 RARYTPRYAQQTL 58
          R+RYTPR AQ+T+
Sbjct: 32 RSRYTPRSAQRTV 44


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 34  AALRATNTSSRKHGVLT-SAYSHSFIIINTNNPNHKCKNTSQ 156
           AA+ A + S   +G  + ++YSH   +++T+ PNH     SQ
Sbjct: 477 AAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQ 518


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 76  VLTSAYSHSFIIINTNNPNHKCKNTSQSRTSVKNSNFLTDLTF 204
           +L   +  + II+N +  +     +S +R +  NSNF    +F
Sbjct: 638 ILFETFDKADIILNRSPTSKHLSTSSLNRVNSSNSNFQDSKSF 680


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 94  SHSFIIINTNNPNHKCKNTSQSRTSVKNSNFLTD 195
           ++S I++NT+  + + KN       +KN+  + D
Sbjct: 837 AYSIILLNTDLHSPRIKNKMTKEDFIKNNRGIND 870


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 257 FFLNRNEKNKVS*RAKIKNVKSVKKL 180
           F+L RNE+ K+    K K+++  K L
Sbjct: 133 FYLKRNEQKKLIQMDKYKSMEGTKAL 158


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 199 SSPSKNYYF*PMFLIGT 149
           S+PS +YYF P+ ++ T
Sbjct: 133 STPSPSYYFNPLTMLET 149


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 34  AALRATNTSSRKHGVLTSAYSHSFIIINTNNPNHKCKNTSQSRTSV 171
           +  RA N  + KHG++ S+ +         NP+    N + S  +V
Sbjct: 269 SVFRAVNDYATKHGLMDSSLAEEKAAPVPKNPSVSYLNEASSLENV 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 897,568
Number of Sequences: 5004
Number of extensions: 13360
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)