Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f24
         (259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047           25   6.3  
05_06_0018 + 24966721-24968856                                         25   6.3  
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886...    25   6.3  
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800...    25   8.4  

>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
          Length = 162

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 73  GVLTSAYSHSFIIINTNNPNHKCKNTSQSRTSVKNSNF 186
           G+  S Y+ S+      +P+H      +S+ SV N NF
Sbjct: 119 GLRDSGYTDSYSFDADPSPSHYTATPKKSQLSVGNKNF 156


>05_06_0018 + 24966721-24968856
          Length = 711

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 28  LYAALRATNTSSRKHGVLTSAYSHSFIIIN 117
           LY A R  ++     GV+  AYS S+++++
Sbjct: 37  LYGATRRRSSDKLLRGVMWMAYSLSYVVVS 66


>04_03_0283 +
           13887388-13887573,13887711-13887806,13888517-13888637,
           13888734-13888840,13888949-13889166,13890219-13890396,
           13890492-13890611,13891601-13891687,13892401-13892511,
           13892618-13893439
          Length = 681

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -2

Query: 204 KRQVRQKITIFDRCS*LGRIFAFMIWIICIYYYKRM 97
           ++ + ++I+ F  CS L  +  +++ I  +YY K +
Sbjct: 56  RKSIYKRISNFSTCSNLTILLLWIVMIFLVYYIKHV 91


>01_06_1675 +
           39078774-39078890,39079607-39079723,39079950-39080006,
           39080340-39080417,39080553-39080597,39080872-39080931,
           39081149-39081271,39081850-39081927,39082056-39082125,
           39082612-39082719,39082962-39083095,39083177-39083247,
           39083384-39083432,39083507-39083557
          Length = 385

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 133 HKCKNTSQSRTSVKNSNFLTDLTFLIFA 216
           + CK   + + S  + NFLT++T +IFA
Sbjct: 44  YMCKVDGKFKFSPVSVNFLTEITKIIFA 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,130,746
Number of Sequences: 37544
Number of extensions: 66246
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)