Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f24
         (259 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044799-1|AAH44799.1| 1062|Homo sapiens chromosome 4 open readi...    28   4.7  
AK002193-1|BAA92130.1|  832|Homo sapiens protein ( Homo sapiens ...    28   4.7  
AF435925-1|AAL30811.1| 6307|Homo sapiens very large G protein-co...    27   8.2  

>BC044799-1|AAH44799.1| 1062|Homo sapiens chromosome 4 open reading
           frame 21 protein.
          Length = 1062

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 82  TSAYSHSFIIINTNNPNHKCKNTSQSRTSVKNSNF 186
           TS+  +S  ++NTN  +++C    +S T + NS F
Sbjct: 731 TSSSDNSVQLLNTNQNHYECIALDKSNTHISNSLF 765


>AK002193-1|BAA92130.1|  832|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11331 fis, clone PLACE1010547. ).
          Length = 832

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 82  TSAYSHSFIIINTNNPNHKCKNTSQSRTSVKNSNF 186
           TS+  +S  ++NTN  +++C    +S T + NS F
Sbjct: 609 TSSSDNSVQLLNTNQNHYECIALDKSNTHISNSLF 643


>AF435925-1|AAL30811.1| 6307|Homo sapiens very large G protein-coupled
            receptor 1b protein.
          Length = 6307

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 31   YAALRATNTSSRKHGVLTSAYSHSFIIINTNN 126
            YAA+     S   HGVL  A S  F+++   N
Sbjct: 2810 YAAVLTVEASDEPHGVLNFALSSRFVLLQEAN 2841


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,649,726
Number of Sequences: 237096
Number of extensions: 437978
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 76,859,062
effective HSP length: 63
effective length of database: 61,922,014
effective search space used: 1362284308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)