Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f24
         (259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AC024850-1|AAF60860.2|  404|Caenorhabditis elegans Groundhog (he...    26   3.2  
Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical pr...    26   4.2  
L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical pr...    25   5.6  

>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 67  KHGVLTSAYSHSFIIINTNNPN--HKCKNTSQSRTSVKNSNFLTDLT 201
           KHG  ++ YSHS I  N+ +P        TS    +  + NF T  T
Sbjct: 193 KHGTPSAVYSHSDITTNSPDPTTISSDSTTSSDNFAAFDWNFFTKST 239


>AC024850-1|AAF60860.2|  404|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 16 protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 40  LRATNTSSRKHGVLTSAYSHSFIIINTNNPNHKCK 144
           +R  +TS R HGVLT  +    +I   ++   K K
Sbjct: 78  IRRRSTSRRLHGVLTEPFGTPLVISGNSSEKKKKK 112


>Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical
           protein F58G1.1 protein.
          Length = 965

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -3

Query: 101 ECEYADVRT-PCLRLEVFVARNAA 33
           E ++ D+++ PC++LEVF  +N A
Sbjct: 182 EMDHKDLKSLPCIKLEVFPTKNPA 205


>L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical
           protein F10E9.3 protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 25  TLYAALRATNTSSRKHGVLTSAYSHSFIIINTNNPNHKCKNTSQSRTSVKNSNFLTDLTF 204
           ++  A+   N      G +  A SH  +++ +   N    NT QSR   + +NF +DL  
Sbjct: 297 SIQEAMELANAQKESIGNIARASSHHNMLLGSMIINGL--NTLQSRDKDEYTNFSSDLFS 354

Query: 205 LI 210
           LI
Sbjct: 355 LI 356


>Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical
           protein F57A8.3 protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 147 IFAFMIWIICIYY 109
           I  F+IW IC+YY
Sbjct: 144 ILPFVIWSICVYY 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,911,314
Number of Sequences: 27780
Number of extensions: 73050
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)