Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f24
         (259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.80 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   4.3  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              20   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   7.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   7.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   9.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   9.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    19   9.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    19   9.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    19   9.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    19   9.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    19   9.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    19   9.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    19   9.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    19   9.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    19   9.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    19   9.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   9.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   9.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   9.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 0.80
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 37  ALRATNTSSRKHGVLTSAYSHS 102
           A R TN++S KH    S YSH+
Sbjct: 215 APRLTNSNSIKHESDNSDYSHT 236


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 190 TDLTFLIFAR*LTLFFS 240
           TD+TF I  R  TLF++
Sbjct: 221 TDITFYIIIRRKTLFYT 237


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 193 DLTFLIFAR*LTLFFSF 243
           D+TF++  R  TL++ F
Sbjct: 220 DITFVVIIRRRTLYYFF 236


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -2

Query: 132 IWIICIYYYKRMRI 91
           IW++ +Y+Y  ++I
Sbjct: 6   IWLVSLYWYLILQI 19


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 19  SCTLYAALRATNTSSRKHGVLTSAYSHSFII 111
           SC ++    A  TS+  HG        SF++
Sbjct: 4   SCLIFVGAAAAVTSAGGHGFDAHLRGPSFVM 34


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 19  SCTLYAALRATNTSSRKHGVLTSAYSHSFII 111
           SC ++    A  TS+  HG        SF++
Sbjct: 4   SCLIFVGAAAAVTSAGGHGFDAHLRGPSFVM 34


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 55  CLLRVTRRIACTKAGIDC 2
           CLL   RR+A  +A   C
Sbjct: 524 CLLTNARRVASVRAETYC 541


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 55  CLLRVTRRIACTKAGIDC 2
           CLL   RR+A  +A   C
Sbjct: 492 CLLTNARRVASVRAETYC 509


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +3

Query: 144 KYVPIKNIGQK**FFDGLDVFNFRALTNFIFFIPI 248
           KY+ + + G+     DG+       +TN +++ P+
Sbjct: 237 KYIKMMDAGESFTAQDGIFGMALSPMTNNLYYSPL 271


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  YSHSFIIINTNNPNH 135
           Y HS ++ +  NP+H
Sbjct: 460 YFHSIVLGSLLNPSH 474


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 3   QSMPAFVHAIRR 38
           Q+ P  +HAIRR
Sbjct: 435 QNKPKVLHAIRR 446


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 245 RNEKNKVS*RAKIK 204
           RNE NK+  R++ K
Sbjct: 19  RNEDNKIDLRSRTK 32


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 100 SFIIINTNNPNHKCKNTSQSRTSVK 174
           +FI+    N   +C+N  +S   +K
Sbjct: 95  NFIVDRLRNDLFECENKEKSNVCLK 119


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 43  RATNTSSRKHGVLTSAYSHSFIIINTNNPNHKCKNTSQSRTSVKNSN 183
           R +N S+   G   +  S++    N NN N+   N + +     N+N
Sbjct: 221 RNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNN 267


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 29  YTPRYAQQTL 58
           Y PRYA+ T+
Sbjct: 231 YDPRYAKMTI 240


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 43  VTRRIACTKAGID 5
           V RR+A  ++GID
Sbjct: 474 VRRRVAVDRSGID 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,047
Number of Sequences: 438
Number of extensions: 1044
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)