Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f23
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.0  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 516 FSSIVFYLYNTISILILN*FIYV 448
           F+  +++LYN+  I IL  F Y+
Sbjct: 424 FAEFIYWLYNSFIIPILQSFFYI 446


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 271  IDIATLNSLPLLCQTDLLV 215
            +D   ++SLPL CQT++ +
Sbjct: 1442 VDFQKVSSLPLFCQTEMKI 1460


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 175 TFLYFFTSLCKNSILGGPFDTTMVMNLKSQC 267
           TF Y   + C N+I GG  +   V    +QC
Sbjct: 49  TFTYLDPAYCYNNICGGSDNIAFVAIRNNQC 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,919
Number of Sequences: 5004
Number of extensions: 41319
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)