Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f23
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68114-6|CAA92160.1|  316|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    27   6.2  

>Z68114-6|CAA92160.1|  316|Caenorhabditis elegans Hypothetical
           protein F17A2.9 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 298 GQERRY*DFIDIATLNS-LPLLCQTDLLVCYFYI 200
           GQ+ +   FI+  TL S LPL+C   +  CYF +
Sbjct: 223 GQKFQRRSFINGLTLQSFLPLVCICPIFACYFVV 256


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 376 YSS*LKVLRSWPKVFLLRMIISYQYEGQERRY*DFIDIATLNSLPLLCQTDLLVCYFYI 200
           YS+  K+     K   +  I++  Y+  +  Y  F+ I T N+   L    L VC FY+
Sbjct: 44  YSNVKKIHEKTDKQIPMYPIMNLLYKMSKNTYCTFLAIVTSNAFLNLSTLILCVCLFYL 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,286,375
Number of Sequences: 27780
Number of extensions: 231161
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)