Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27f21
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 32 0.43
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 29 2.3
01_06_0208 - 27540077-27540992,27541310-27541497 29 3.0
06_03_1478 - 30420097-30420651 29 4.0
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 29 4.0
06_02_0011 - 10569471-10572245 28 5.3
11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355 28 7.0
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674... 28 7.0
01_04_0130 + 16462428-16463210,16463644-16463796,16464707-164647... 28 7.0
12_01_0257 + 1898950-1899636 27 9.3
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/94 (26%), Positives = 37/94 (39%)
Frame = -2
Query: 574 IVPFL*DPTCRTSSSWQAANSPGATTILSNTVCSFVTRLKTAA*SVGDGHSSVCLFRRA* 395
I FL C +S G+ LSNT CS V + SV +S R+
Sbjct: 6 IAVFLSSVICAVASDMGGDPGGGSELHLSNTTCSKVKMVSQVRPSVNQMETSDDATRQVI 65
Query: 394 VSTESSGAGLHLGKAGSANKRSKGGRSIKTRGLL 293
+T + G +G G+ + + GR + G L
Sbjct: 66 PNTRNEG---RMGPTGNTGLKRRKGRGLTINGTL 96
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 321 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 458
PP +L + +FP PA D +L L +RH C P P V+
Sbjct: 17 PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +2
Query: 398 GPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYCCGSRRICSLP--TRRSAASWVLQEGD 571
GPS EA GA R + R A Q CG + P RR SW ++G
Sbjct: 65 GPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGA 124
Query: 572 NDGREER 592
R R
Sbjct: 125 RAARRRR 131
>06_03_1478 - 30420097-30420651
Length = 184
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 267 GRGYRVHHDRCRAPFQEKQFILG*R 193
G+ YR DRC+APF+ +Q + G R
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGGHR 127
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 257 YPRPGRDGASTLQQTPSLDASSAL 328
+PR G DG L QTPS A+ AL
Sbjct: 83 FPRRGEDGVHLLSQTPSSPAAWAL 106
>06_02_0011 - 10569471-10572245
Length = 924
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 348 PAFPRCKPAPDDSVLTQALLKRHTEL--CPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFA 521
PAFP K P SVL L R+ C S + A++++++ L T L +
Sbjct: 227 PAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVI 286
Query: 522 ACQLEEVR-QVGSYKKG 569
C + ++ VG+Y G
Sbjct: 287 VCVVADLLCLVGAYAAG 303
>11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355
Length = 380
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +2
Query: 389 AHSGPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYCCGSRRICSLPTRRSAASWVLQEG 568
A +G KE AM V R + + + S GS C L + + + G
Sbjct: 104 AAAGGGKETTAAMRVRRRREASSAAARDASSSAAGGELGSDARCELSSGGKRSDDLNHRG 163
Query: 569 DNDGREER 592
+ GREER
Sbjct: 164 EKKGREER 171
>10_08_0851 -
21065832-21065948,21066361-21066705,21067181-21067489,
21067574-21067648,21067754-21067917,21067994-21068432
Length = 482
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 278 GASTLQQTPSLDASSALRPFISRTRFS*MQTGSRRLRAHSGP 403
G + TPS+DA + R F + FS GS HSGP
Sbjct: 20 GCCSSSTTPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61
>01_04_0130 +
16462428-16463210,16463644-16463796,16464707-16464784,
16465229-16465348,16465419-16465585,16465683-16465710
Length = 442
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 471 KLQTVLDNIVVAPGEFAACQLEEVRQVGSYKKGTMMAG-KNVADIVVIMKTLPT 629
K+QTV++ I ++ QLE + + S + +G + D+ ++K+LPT
Sbjct: 387 KIQTVVNKIDAIQNDYRTMQLEVLAGIDSLVTTVIESGLRFQVDLSTVIKSLPT 440
>12_01_0257 + 1898950-1899636
Length = 228
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 527 PTRRSAASWVLQEGDNDG 580
PTRR+AASW+ D DG
Sbjct: 58 PTRRTAASWLAVTFDGDG 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,103
Number of Sequences: 37544
Number of extensions: 341498
Number of successful extensions: 879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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