Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f19
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   109   8e-26
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   1.6  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   3.7  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    24   4.8  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   4.8  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     23   8.5  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    23   8.5  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    23   8.5  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  109 bits (263), Expect = 8e-26
 Identities = 50/97 (51%), Positives = 64/97 (65%)
 Frame = +1

Query: 1   KRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYI 180
           K L++TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+   
Sbjct: 173 KGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATY 232

Query: 181 RHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LFLYISIY 291
                H +  HH GFE    Y HF DVV LFLY++IY
Sbjct: 233 NIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 127 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 252
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 190 NNHFSKNHHFG 222
           NNHF+K HH G
Sbjct: 162 NNHFTKTHHQG 172


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  DRIYGSTFFIATGFHGIHVIIGTLFLLICYI 180
           +R YG+   IA  F  + VI    +L+ CY+
Sbjct: 94  ERRYGTLCTIAMFFGFLEVIPAIAYLIACYV 124


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +1

Query: 25  LGFYFTILQAYEYIE----ASFTIADRIYGSTFFIATGFHGIHVI 147
           L  YF+ L +YE +E     S T+ D +YG   +     H +  I
Sbjct: 131 LTIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQINAQHSLGCI 175


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +3

Query: 132 WNSCNNWNFISINLLYS 182
           W+ C  W + S+N +++
Sbjct: 253 WHKCKKWAYYSLNRIFT 269


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 114 HSNRISWNSCNNWNFISINLLY 179
           HS+  ++N+C++ +F S N LY
Sbjct: 451 HSSLSNFNTCDSLSFSSNNSLY 472


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 34  YFTILQAYEYIEASFTIADRIY 99
           YFT+  +   + +SF + D++Y
Sbjct: 82  YFTVKPSEGIVSSSFKVGDKVY 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,004,844
Number of Sequences: 5004
Number of extensions: 16317
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)