Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f19
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0495 - 24907659-24908747                                         27   2.4  
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    27   4.2  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    27   4.2  

>03_05_0495 - 24907659-24908747
          Length = 362

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 97  YGSTFFIATGFHGIHVI----IGTLFLLICYIRHLNNHFSKNHHF 219
           +GS FF+ T  H I V+    +   F L C I+  ++ + + H+F
Sbjct: 238 FGSQFFVLTRKHAIMVVRDMKLWRKFKLPCLIKRRDSCYPEEHYF 282


>11_05_0033 +
           18500092-18501372,18502419-18502826,18502948-18502990,
           18503236-18503282,18504582-18505901
          Length = 1032

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 163 LLICYIRHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LFLYISI 288
           LLICYI +   +++  ++FGFE    Y  ++ +   FL +++
Sbjct: 522 LLICYIENRLFNYATMYYFGFEDDVMYPSYMVLFTTFLGLAL 563


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 96  LWIHFFHSNRIS---WNSCNNWNFISI 167
           L+IH  H+++IS   WN C +W   S+
Sbjct: 558 LFIHGGHTSKISDFSWNPCEDWVIASV 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,467,755
Number of Sequences: 37544
Number of extensions: 79060
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)