Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f15
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    28   0.59 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   2.4  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   3.2  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    25   3.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   4.2  
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.5  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   7.3  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    24   9.7  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 199 FNFFPQFLNCXLRTLSQRX*AXVFFRSISF-DEXMHIGEADSQQDNQQLVHFGYLRTSSR 23
           F+ + Q + C +R +S          S+ +  E + IG   ++++N  +      + + +
Sbjct: 130 FHIYSQLIMCFIREMSFENAEETLNASLPYKSEIIGIGLDSNEENNPPIKFLKVFQRARQ 189

Query: 22  IGYRIT 5
           +GYR+T
Sbjct: 190 LGYRLT 195


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 95  VHAFVKRDAPKEDXSLXTLAESAKXTIEELREKVESALAP 214
           V A +K+D  +E  S   L      TIE+L+ K E+   P
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPP 167


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = +2

Query: 107 VKRDAPKEDXSLXTLAESAKXTIEELREKVESALAPETVXX-------NFGTMVDSFNEF 265
           +K+  P E  +  T  E    + E+    + ++ + +           N+   +  F+EF
Sbjct: 13  MKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEF 72

Query: 266 YKSLKPAE 289
           Y S+K AE
Sbjct: 73  YDSMKSAE 80


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = -1

Query: 379 YSIMSRTLLHSIYLGLCT*ILKNYFSGFRCFRGLQTFIKFVEAVYHRAKVXXNSLRGQGG 200
           Y +  R +++  YL +   + ++Y  GF  FR ++ ++  +  + H+ ++    + G G 
Sbjct: 60  YDLEQRMIIYKDYLCIEK-LEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIILVDGNGV 118

Query: 199 FNFFPQFLNCXLRTL 155
            +     L C L  L
Sbjct: 119 LHPVGFGLACHLGVL 133


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 304 RSNFLVSKYITPNISNVIMFSTLLNKS 384
           ++  L ++  TPN SNV + ++L+N+S
Sbjct: 505 KNTILSNENNTPNYSNVCLSTSLINRS 531


>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 322 ILKNYFSGFRCFRGLQTFIKFVEAVYHRAKVXXNSLRGQGGFNFFPQFLN 173
           +  N F+    ++ ++  +   EAV  R +    SLR Q   NFF Q L+
Sbjct: 55  VQSNEFTESEDYKSIERSLAVTEAVMARFEKEMGSLRDQ--MNFFHQILD 102


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  CSRFVKTFSNIQNEQAADYLVGYLPRQC 96
           C    ++F N+     +D LVG+LPR C
Sbjct: 597 CVSNYRSFINVTAR--SDVLVGFLPRSC 622


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -1

Query: 274 TFIKFVEAVYHRAKVXXNSLRGQGGFNFFPQFLNCXL 164
           T  + +E V  R  V     RGQG   F P  L   L
Sbjct: 509 TMAEHIEKVQEREYVIKRKKRGQGVTEFVPSSLGVAL 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,889
Number of Sequences: 5004
Number of extensions: 23189
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)