Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f15
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088...    29   1.3  

>05_03_0511 +
           14907475-14907933,14907948-14908178,14908520-14908855,
           14909571-14910126,14910217-14910424,14910519-14910885,
           14910988-14911110
          Length = 759

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 176 EELREKVESALAPETVXXNFGTMVDSFNEFYKSLKP 283
           EELR  V       T    FGT++DS+N   + LKP
Sbjct: 633 EELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLKP 668


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,530,123
Number of Sequences: 37544
Number of extensions: 138071
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)