Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f15
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical...    26   8.4  

>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 310 YFSGFRCFRGLQTFIKFVEAVYHRAK-VXXNSLRGQGGFNFFPQFLNC 170
           +F G  CF G+ + +  ++ VY   K V   +L  Q  F F   +  C
Sbjct: 213 FFGGICCFTGVSSVLTCLKIVYDSRKIVSRETLTLQRNFTFILMYQAC 260


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 359 IITFDIFGVMYLDTKKLLLRLSVLPRASDFYKIR 258
           +ITF IF + YL     +L+LS +  +  F+KI+
Sbjct: 177 LITFLIFSIGYLSGAYHILKLSKMKISKKFWKIQ 210


>AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical
           protein B0205.4 protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 370 MSRTLLHSIYLGLCT*IL 317
           ++R+L HSI++GLC  IL
Sbjct: 6   VTRSLYHSIFIGLCVYIL 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,666,891
Number of Sequences: 27780
Number of extensions: 129238
Number of successful extensions: 305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)