Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f11
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    29   1.4  
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708...    28   2.4  
12_01_0128 - 967720-968247,969327-969596                               28   3.2  
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    27   5.6  
04_01_0241 - 3138951-3139511                                           27   7.3  
08_02_0294 - 15432424-15432669,15433007-15433099,15433168-154332...    26   9.7  
07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547     26   9.7  

>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 154 LCFGYMKLYSYNQETKNCEEFIYGGCQG-NDNRFSTLAECEQKCIN*LIIS 303
           LCF        N  T+      Y GCQG   N  ST+   E K ++ ++ S
Sbjct: 324 LCFLQQTRSHQNMITQEGSSLTYNGCQGITSNFLSTVENAEDKFVHKIVTS 374


>07_03_1647 + 28370226-28370369,28370452-28370611,28370704-28370831,
            28372512-28372628,28372729-28372782,28372985-28373075,
            28373517-28373688,28374452-28374573,28374726-28374817,
            28375331-28375373,28375596-28375656,28376367-28376515,
            28376659-28376729,28376805-28376975,28377056-28377124,
            28377427-28377528,28377629-28377697,28378060-28378138,
            28378238-28378337,28378438-28378513,28378715-28378894,
            28379430-28379552,28379634-28379717,28380068-28380252,
            28380339-28380477,28380585-28380644,28380926-28381030,
            28381332-28381445
          Length = 1019

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 116  SVVGSSLMTDVKHAAKKTPANRKSTDLNMTSLIQY 12
            S V S  M D KHA ++  A+  S   NMT LIQ+
Sbjct: 966  SDVRSLRMNDFKHAHEQVCASITSDSRNMTELIQW 1000


>12_01_0128 - 967720-968247,969327-969596
          Length = 265

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 158 QRPASPKACSHIGKSVVGSSLMTDVKHAAKKTPANRKSTDL 36
           +RP +P ACS  G SVV S    ++  + +K   NR S+ L
Sbjct: 227 RRPYTPMACSSSGNSVVHSG---EIIKSKEKYHLNRSSSSL 264


>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 155 RPASPKACSHIGKSVVGSSLMTDVKHAAKKTPANRK 48
           RP SP +    G+ V  SSL    +H A  TP  R+
Sbjct: 42  RPPSPPSPLPGGRGVPHSSLAAASRHYASSTPGRRR 77


>04_01_0241 - 3138951-3139511
          Length = 186

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 151 GLCFGYMKLYSYNQETKNCEEFIYGGCQGNDNRFSTL 261
           GLC G   L ++    K  +E++Y   +G DN F+TL
Sbjct: 126 GLCRG---LDNFEALHKTMKEYLYDESKGCDNEFTTL 159


>08_02_0294 -
           15432424-15432669,15433007-15433099,15433168-15433251,
           15434311-15434446,15434601-15434746,15435017-15435242,
           15435885-15435967,15436867-15437061,15437148-15437246,
           15438237-15438350,15438424-15438511,15438790-15438995,
           15439306-15439358,15440473-15440776,15441278-15441366,
           15441584-15441958,15442382-15442446,15442945-15442970,
           15444007-15444225
          Length = 948

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 175 VSYSRNKDPHRQKPARI 125
           V+Y RN+D H QK ARI
Sbjct: 32  VNYIRNQDEHSQKRARI 48


>07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547
          Length = 690

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 132 AGFWRCGSLFRLYETI 179
           +GFWR GS+ + Y+T+
Sbjct: 403 SGFWRAGSIEKAYKTV 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,910,371
Number of Sequences: 37544
Number of extensions: 184531
Number of successful extensions: 416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)