Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f08
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    56   4e-09
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.1  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   9.3  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 33/142 (23%), Positives = 70/142 (49%)
 Frame = +2

Query: 197 LQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLLKPGSLPNI 376
           ++E    +LL+L+   +G K  + +  L+G +G +   + L++H +  ++     ++PN 
Sbjct: 5   VKEKATFKLLDLIDSVTGKKSLLLERDLSGILGQIVTTNTLQEHGIPQVYWFNE-NIPND 63

Query: 377 TVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVPRKSELCKVHLTNRGVVSN 556
             K  I++ RP      LVA ++   + +    +E  +  +P  + L +  L   GV   
Sbjct: 64  IEKKTIYLCRPTYENAKLVATHVRQFQ-RDMLRIESTVIVLPTSNILFETVLQEEGVFGE 122

Query: 557 MTIEEFKCDIIPFESDVMSLEL 622
           + + E+    +P + D++SLEL
Sbjct: 123 LLVTEWPLHAVPLDKDLLSLEL 144


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 197 LQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLLKP 358
           L +  +TE+L  L+ Y   +  + DD++     LV  Y   +DH   +  ++ P
Sbjct: 71  LTKADQTEVLQFLKTYVEDESFVGDDFVMPKYTLVLPYRVYRDHVKKHGDIITP 124


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 350 LKPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVE 481
           L PGS  ++  + ++  SR + S +DL++ +++ +      PVE
Sbjct: 478 LLPGSYQDLVRRCLMRDSRKRPSAIDLLSSHVIRLGTAVLPPVE 521


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 445 NVISNQIHQ*KFGSTNKYNMFDGY 374
           NVIS+     K G T+ Y+ FDG+
Sbjct: 366 NVISSMSKARKLGYTDYYDTFDGF 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,818
Number of Sequences: 5004
Number of extensions: 49586
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)