Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f08
         (645 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069498-1|AAL39643.1|  617|Drosophila melanogaster LD22396p pro...    91   1e-18
AF133260-1|AAD38513.1|  617|Drosophila melanogaster vacuolar pro...    91   1e-18
AE014298-2872|AAN09503.1|  617|Drosophila melanogaster CG12230-P...    91   1e-18
AE014298-2871|AAF48972.1|  617|Drosophila melanogaster CG12230-P...    91   1e-18
X51753-1|CAA36042.1|  895|Drosophila melanogaster protein ( Dros...    30   3.1  

>AY069498-1|AAL39643.1|  617|Drosophila melanogaster LD22396p
           protein.
          Length = 617

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
 Frame = +2

Query: 173 GGRLNVALLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLL 352
           G R+N+ LLQE    ELL  L +  G KV + D+ + GP+ LV +     D  +  + L 
Sbjct: 9   GQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGIRLLALK 68

Query: 353 KPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVPRKSELCKVHL 532
               LP   V +++++ RP+++LM+ +A ++     +  A  ++H+ F PR+S LC   L
Sbjct: 69  PELHLPR-EVANVVYVMRPRVALMEQLAAHV-KAGGRAAAGRQYHILFAPRRSCLCVSQL 126

Query: 533 TNRGVVSNM-TIEEFKCDIIPFESDVMSLELXNDFRE 640
              GV+ +   IEE   + +P + D++S+E+ N FR+
Sbjct: 127 EVSGVLGSFGNIEELAWNYLPLDVDLVSMEMPNAFRD 163


>AF133260-1|AAD38513.1|  617|Drosophila melanogaster vacuolar
           protein sorting protein33 protein.
          Length = 617

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
 Frame = +2

Query: 173 GGRLNVALLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLL 352
           G R+N+ LLQE    ELL  L +  G KV + D+ + GP+ LV +     D  +  + L 
Sbjct: 9   GQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGIRLLALK 68

Query: 353 KPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVPRKSELCKVHL 532
               LP   V +++++ RP+++LM+ +A ++     +  A  ++H+ F PR+S LC   L
Sbjct: 69  PELHLPR-EVANVVYVMRPRVALMEQLAAHV-KAGGRAAAGRQYHILFAPRRSCLCVSQL 126

Query: 533 TNRGVVSNM-TIEEFKCDIIPFESDVMSLELXNDFRE 640
              GV+ +   IEE   + +P + D++S+E+ N FR+
Sbjct: 127 EVSGVLGSFGNIEELAWNYLPLDVDLVSMEMPNAFRD 163


>AE014298-2872|AAN09503.1|  617|Drosophila melanogaster CG12230-PB,
           isoform B protein.
          Length = 617

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
 Frame = +2

Query: 173 GGRLNVALLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLL 352
           G R+N+ LLQE    ELL  L +  G KV + D+ + GP+ LV +     D  +  + L 
Sbjct: 9   GQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGIRLLALK 68

Query: 353 KPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVPRKSELCKVHL 532
               LP   V +++++ RP+++LM+ +A ++     +  A  ++H+ F PR+S LC   L
Sbjct: 69  PELHLPR-EVANVVYVMRPRVALMEQLAAHV-KAGGRAAAGRQYHILFAPRRSCLCVSQL 126

Query: 533 TNRGVVSNM-TIEEFKCDIIPFESDVMSLELXNDFRE 640
              GV+ +   IEE   + +P + D++S+E+ N FR+
Sbjct: 127 EVSGVLGSFGNIEELAWNYLPLDVDLVSMEMPNAFRD 163


>AE014298-2871|AAF48972.1|  617|Drosophila melanogaster CG12230-PA,
           isoform A protein.
          Length = 617

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
 Frame = +2

Query: 173 GGRLNVALLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLL 352
           G R+N+ LLQE    ELL  L +  G KV + D+ + GP+ LV +     D  +  + L 
Sbjct: 9   GQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGIRLLALK 68

Query: 353 KPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVPRKSELCKVHL 532
               LP   V +++++ RP+++LM+ +A ++     +  A  ++H+ F PR+S LC   L
Sbjct: 69  PELHLPR-EVANVVYVMRPRVALMEQLAAHV-KAGGRAAAGRQYHILFAPRRSCLCVSQL 126

Query: 533 TNRGVVSNM-TIEEFKCDIIPFESDVMSLELXNDFRE 640
              GV+ +   IEE   + +P + D++S+E+ N FR+
Sbjct: 127 EVSGVLGSFGNIEELAWNYLPLDVDLVSMEMPNAFRD 163


>X51753-1|CAA36042.1|  895|Drosophila melanogaster protein (
           Drosophila lethal(1)2Cb gene for sarcomeric alpha
           actinin. ).
          Length = 895

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 194 LLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLLK 355
           LL ETMR E L  L Q    K    +DW  G   ++    F + +++N +  LK
Sbjct: 385 LLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDF-RQYKLNELKALK 437


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,117,436
Number of Sequences: 53049
Number of extensions: 508920
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)