Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f08
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    51   8e-07
M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical pr...    40   0.002
AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    28   6.5  
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF016681-15|AAB66168.1|  172|Caenorhabditis elegans Hypothetical...    27   8.6  

>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
 Frame = +2

Query: 194 LLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMF---LLKPGS 364
           LL+  M+ E ++ L+   G K    D  L  P+ ++A  S +K H V  +    L K   
Sbjct: 16  LLRMVMQREFIHYLETLPGTKELFIDKCLLRPLDMIATSSDMKRHGVKRIMHFDLQKSPQ 75

Query: 365 LPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVPRKSELCKVHLTNRG 544
           + NI +   +F  RP +     + +Y+      ++  V     +  R+ E C +   + G
Sbjct: 76  VWNIEIDQRVFFLRPNVENARKIVEYVEESSENRSICV----IWCNRQLEECDLAFESSG 131

Query: 545 VVSNMTIEEFKCDIIPFESDVMSLE 619
           V+ ++T       ++P ESD+ SL+
Sbjct: 132 VIGHITQLSLNMCLLPLESDLFSLQ 156


>M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical
           protein B0303.9 protein.
          Length = 603

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
 Frame = +2

Query: 176 GRLNVALLQETMRTELLNLLQQYSGPKVTIWDD--WLAGPVGLVAQYSFLKDHEVNNMFL 349
           G   +    E  R  L ++L    G K  +WD    +   V L A  S L  H V     
Sbjct: 18  GTSEIKSANEYSRNLLFSVLDSLDGNKTIVWDRDRSVMHRVNLFAGASVLAAHGVVANHS 77

Query: 350 LKPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFFVP 502
           ++  +  + +  H++F   P +  +DL+ DYI ++R    + + + +FF+P
Sbjct: 78  IE--TKKSASTPHVVFFLAPTMVSLDLLCDYIDNVR--NDSKILYQVFFIP 124


>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 194 LLQETMRTELLNLLQQYSGPKVTIW-DDWLAGPVGLVAQYS 313
           ++ + +R   LN+ ++Y   KV +W D+  + P+ L+ +Y+
Sbjct: 201 MIFDHLRMVSLNITEEYPSTKVLMWYDELKSAPLELIKEYN 241


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 194 LLQETMRTELLNLLQQYSGPKVTIW-DDWLAGPVGLVAQYS 313
           ++ + +R   LN+ ++Y   KV +W D+  + P+ L+ +Y+
Sbjct: 201 MIFDHLRMVSLNITEEYPSTKVLMWYDELKSAPLELIKEYN 241


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 102 IVIC*LFFFQHINEFIIDTTLSLIQIYV 19
           I+IC + + QH++E I  T + L+  YV
Sbjct: 442 IIICEIEYLQHVSELIEKTDVGLLTNYV 469


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 102 IVIC*LFFFQHINEFIIDTTLSLIQIYV 19
           I+IC + + QH++E I  T + L+  YV
Sbjct: 442 IIICEIEYLQHVSELIEKTDVGLLTNYV 469


>AF016681-15|AAB66168.1|  172|Caenorhabditis elegans Hypothetical
           protein F22E5.2 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 476 VEFHLFFVPRKSELCKVHLTNRGVVSNMTIEEFKCDIIPFES 601
           VE H+F+V  K+   +  ++NR  + N   ++F C I+P ++
Sbjct: 61  VETHIFYVTCKN---RYPISNRNCLINRHTDDFFCFILPVDA 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,400
Number of Sequences: 27780
Number of extensions: 275135
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)