Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27f06
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 44 9e-05
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 36 0.014
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 34 0.056
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 31 0.69
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 30 1.2
05_03_0411 - 13622241-13622591,13622838-13623476,13624031-136241... 30 1.2
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 28 3.7
12_01_0061 + 514798-515967 27 6.5
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 27 6.5
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 6.5
01_06_1183 - 35176780-35177266,35179631-35181093 27 6.5
12_02_1279 + 27510605-27513301 27 8.6
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 43.6 bits (98), Expect = 9e-05
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +3
Query: 225 RETIRKLATEQISPLVKKMEDEHRI--DDGIRQMLFDNGLMGIETPVEYSGSGCNFLTMM 398
+E++ K A E I+P ++ + D + +++ D L G+ P EY G G ++
Sbjct: 39 KESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHC 98
Query: 399 LVVEELSRVDPAVAAYVDIHNTL-VNSL 479
+ +EE+SR +V H+ L +N L
Sbjct: 99 IAMEEISRASGSVGLSYGAHSNLCINQL 126
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/101 (20%), Positives = 49/101 (48%)
Frame = +3
Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
+LT +E ++R+ +R + ++I+P++ ++ L G+ G T Y G
Sbjct: 49 LLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAG-GTIKGYGCPG 107
Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTE 500
+ + + E++RVD + + ++ +H++L G+E
Sbjct: 108 LSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSE 148
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 34.3 bits (75), Expect = 0.056
Identities = 21/101 (20%), Positives = 49/101 (48%)
Frame = +3
Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
+LTE+E ++ +R+ +++P++ K ++ + + G+ G T Y G
Sbjct: 60 LLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAG-GTIKGYGCPG 118
Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTE 500
+ + E++RVD ++A++ + + L +LG+E
Sbjct: 119 LSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSE 159
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 30.7 bits (66), Expect = 0.69
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +3
Query: 201 LTEDELAMR--ETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFD 329
L E+ELA R E+IRK ++++ K E + R+++GI+Q LFD
Sbjct: 158 LLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQ-LFD 201
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 36 RFHS--ANANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTE 209
RFH NANR+K+ +++ + ++ +EQ + + + AK QM+A + R L E
Sbjct: 200 RFHKNEQNANRLKVLEIQQKLSSEKIEQAK---ISHLAAKEQMEAAKVQREARKL----E 252
Query: 210 DELAMRETIRKLATEQISPLVKKMEDEHRI 299
E M ET +L S M DE ++
Sbjct: 253 VEARMYETYNRLLAVDTS----LMSDEEKV 278
>05_03_0411 -
13622241-13622591,13622838-13623476,13624031-13624177,
13624364-13624486,13624609-13624784,13625168-13625444
Length = 570
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 81 RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDEL 218
R ++GNK+ ++W ++ A + ++K Y+TE P D+L
Sbjct: 232 RTILGNKLYQEWFNKRFNAAVFENELKWYATEPYPGKEDYTVADQL 277
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 28.3 bits (60), Expect = 3.7
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +3
Query: 51 NANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRE 230
NANR+K+ +++ + ++ +EQ + + + AK QM+A + R L E E M E
Sbjct: 330 NANRLKVLEIQQKLSSEKIEQTK---ISHLAAKEQMEAAKVQREARKL----EVEARMYE 382
Query: 231 TIRKLATEQISPLVKKMEDEHRI 299
T +L S M DE ++
Sbjct: 383 TYNRLLVVDTS----LMSDEEKV 401
>12_01_0061 + 514798-515967
Length = 389
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 54 ANRIKMFPLRRVVGNKILEQWRSQATAAVG-AKTQMKAY 167
+NR ++ LRRV N++L R A AA ++ ++KAY
Sbjct: 14 SNRDGLYSLRRVPANRLLYPSRRAAEAATAKSEEEVKAY 52
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 187 RGVTSVLYAFI*VFAPTAAVAWDL-HCSKILLPTTRRNG 74
RGV ++L P A A+D+ HCS+ L+P ++ NG
Sbjct: 255 RGVPAMLGIMATKRLPYPARAFDMAHCSRCLIPWSKYNG 293
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.5 bits (58), Expect = 6.5
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 24 AEAARFHSANANRIKMFPLRRVVG---NKILEQWRSQATAAVGAKTQMKAYSTEVTPRPL 194
A+A +ANA R+K P RRVV NK ++ + Q +VG + M+ Y T +
Sbjct: 644 ADATEDDNANAERLKEMPQRRVVAVPRNKEEKEPKRQ-KKSVGVEGLMERYLDMRTKQ-- 700
Query: 195 TMLTEDELAM--RETIRKLATEQ 257
TEDE RE LA E+
Sbjct: 701 ---TEDEAVQLAREKEAHLAREK 720
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 78 LRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRP 191
L + +G++ E+W + A VG K TPRP
Sbjct: 218 LEQEIGDRASEKWTASMIALVGLLRYAKCVLFSATPRP 255
>12_02_1279 + 27510605-27513301
Length = 898
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 353 SGRIQRFRLQFPDNDVGGGRTVSSGPSRGRLR 448
+GR FRL+FP D G + S GRLR
Sbjct: 254 NGRDTVFRLRFPSPDANGDPCLLKLDSSGRLR 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,956
Number of Sequences: 37544
Number of extensions: 313301
Number of successful extensions: 952
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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