Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f06
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   9.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 407 HHQHHCQEI 381
           HH HHC EI
Sbjct: 471 HHWHHCPEI 479


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 334 PLSNNICRIPSSMRCSSSIFFTSGLI 257
           P+  + C  P +  CS S  +T+G +
Sbjct: 158 PIPASCCNSPENNTCSISNSYTNGCV 183


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 74  PITTRCWQQDFR 109
           P+   CW +DFR
Sbjct: 387 PVIYACWSRDFR 398


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 182 GNFCAVCFHLSLCSNGSRC 126
           GN  +   H ++CSNG  C
Sbjct: 362 GNILSPSIHDNICSNGWIC 380


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 359 YRSFDAHQPIIKQHLSDTIIDAVFIFHFLHKRTYL 255
           Y  FD+    +  +  +TI DA  +   LH+ TY+
Sbjct: 520 YEQFDSFCGQLDVYKVETIGDAYCVACGLHRDTYI 554


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 389  DNDVGGGRTVSSGPSRGRLRRHSQHL 466
            +N +    TVSSG S    R  S+H+
Sbjct: 1309 NNLIATNTTVSSGSSEDHRRPLSEHI 1334


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/42 (21%), Positives = 16/42 (38%)
 Frame = +2

Query: 158 ESIQHRSYPTTFDHADRR*TRHEGNNTETSDRTNKSACEENG 283
           E+ Q  S  +T    +        NN   ++  N +   +NG
Sbjct: 217 ETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNG 258


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 374 GTAVFYRSFDAHQPIIKQHLSDTIIDAVFIFHF 276
           G  V    F   QP+ K   +DT ++ V +  F
Sbjct: 30  GPNVIDHYFRDLQPLFKLACTDTFMEGVIVLAF 62


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 164 IQHRSYPTTFDHADR 208
           +   +YPTT  H DR
Sbjct: 471 LSENNYPTTSIHGDR 485


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 111 QWRSQATAAVGAKTQMK 161
           QWR    A V  KTQ++
Sbjct: 36  QWRKPKPAMVEEKTQLR 52


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 375 RNRCILPEFRC 343
           R  C++PE++C
Sbjct: 253 RPECVVPEYQC 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,543
Number of Sequences: 438
Number of extensions: 3056
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)