Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27f04
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618... 61 9e-10
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 52 3e-07
03_05_1030 - 29844628-29845059,29845161-29845245,29845989-298460... 43 3e-04
02_05_0537 - 29836846-29837220 31 1.1
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 30 2.0
05_06_0084 - 25435650-25436600 29 2.6
03_03_0188 + 15269347-15270213 29 2.6
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 29 3.5
02_03_0102 - 15238808-15239437,15241609-15243264 29 3.5
10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187... 29 4.6
08_02_0426 - 16987352-16987841,16989537-16989640 29 4.6
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 28 6.1
11_06_0750 + 26917239-26918071,26918319-26920773 28 8.1
11_01_0445 - 3455449-3456096,3456348-3457958 28 8.1
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 28 8.1
>11_06_0390 -
23060034-23060399,23060486-23060573,23061767-23061843,
23062971-23063057
Length = 205
Score = 60.9 bits (141), Expect = 9e-10
Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Frame = +1
Query: 154 AFAARGNRPP---LSPAQIQKMLDENAHLIQTIQEYQAKGQIMECHQYQQILHRNLVYLA 324
A AA PP ++ QIQK LDEN LI I E Q G++ EC QYQ L +NL+YLA
Sbjct: 9 AGAAAAAVPPAAGITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLA 68
Query: 325 SVADAN--QNIQS---ILPPPHQLATGNVSQSPPINPP 423
++ADA QN S ++ P G+ P+ PP
Sbjct: 69 AIADAQPPQNPGSRPQMMQPGATPGAGHYMSQVPMFPP 106
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 52.4 bits (120), Expect = 3e-07
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +1
Query: 211 LDENAHLIQTIQEYQAKGQIMECHQYQQILHRNLVYLASVADANQNIQSILPP--PHQLA 384
LDEN LI I E Q G++ EC QYQ L +NL+YLA++AD P PH +
Sbjct: 53 LDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQPQTTISRPQMVPHGAS 112
Query: 385 TG----NVSQSPPINPPTNATDASAGGQQ 459
G +SQ P P T T QQ
Sbjct: 113 PGLGGQYMSQVPMFPPRTPLTPQQMQEQQ 141
>03_05_1030 -
29844628-29845059,29845161-29845245,29845989-29846087,
29846478-29846566,29847583-29847633
Length = 251
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 211 LDENAHLIQTIQEYQAKGQIMECHQYQQILHRNLVYLASVADA 339
LDEN LI I + Q G++ EC + Q L NL+YLA++AD+
Sbjct: 56 LDENKQLILAILDNQNNGKVEECARNQAKLQHNLMYLAAIADS 98
>02_05_0537 - 29836846-29837220
Length = 124
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -3
Query: 426 GWGIYRWRLRYISGG*LMRRR*NALYILVSVSYRCEINQVPVQYL 292
GWG+ RW LR IS + + NA+ + V +C N PVQ+L
Sbjct: 72 GWGVGRWHLRVISSK-IYGQFYNAVGVGVQERPKCRSNP-PVQFL 114
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 364 PPPHQLATGNVSQSPP-INPPTNATDA 441
PPPH A+GN + +PP NPP A
Sbjct: 25 PPPHPAASGNEAAAPPKPNPPITPAPA 51
>05_06_0084 - 25435650-25436600
Length = 316
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 361 LPPPHQLATGNVSQSPPINPPTNATDASAGG 453
LPP L +++ SP PP NA A+AGG
Sbjct: 142 LPPLGHLIPFSLAGSPASQPPENAAAAAAGG 172
>03_03_0188 + 15269347-15270213
Length = 288
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 316 YLASVADANQNIQSILPPPHQLATGNVSQSPPINPPTNATDASAGGQ 456
+L + A A + S++ A NV +PP PPT+A +S+ Q
Sbjct: 183 FLGNAAAATTSTSSLVDALALFAKSNVMVAPPPPPPTSAAASSSADQ 229
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 244 QEYQAKGQIMECHQYQQILHRNLVYLASVADANQN 348
Q A+ + EC+ ++I HRNLV + +V D+ N
Sbjct: 759 QTRAARSFMSECNALKRIRHRNLVRIITVCDSLDN 793
>02_03_0102 - 15238808-15239437,15241609-15243264
Length = 761
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 127 NILNYTMSVAFAARGNRPPLSPAQIQKMLDENAHLIQTIQEY 252
N+L+ SVA AA GN P P +++ L+E L Q ++Y
Sbjct: 343 NLLSVVSSVANAAGGNEGP-DPREVELYLEEILSLTQLGEDY 383
>10_08_0928 +
21617977-21618157,21618260-21618378,21618653-21618774,
21618853-21619049,21619350-21619603,21619779-21619880,
21619976-21620404,21620611-21621369,21621586-21621771
Length = 782
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 175 RPPLSPAQIQKMLDENAHLIQTIQEYQAKGQIMECHQYQQI 297
+PP+ A + + EN HL+ + + K E H+ Q+
Sbjct: 627 KPPVGLADLVEQAVENGHLVDILDKSAGKWPAQEAHELAQL 667
>08_02_0426 - 16987352-16987841,16989537-16989640
Length = 197
Score = 28.7 bits (61), Expect = 4.6
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 178 PPLSPAQIQKMLDENAHLIQTI-QEYQAKGQIMECHQYQQILHRNLVYLASVADANQNIQ 354
PPLS +++ +L++N LIQ I Q ++A+ I N +A V D N+
Sbjct: 93 PPLSLGEVRGILEQNHTLIQEISQNHKARDADRLTRNVALIRDLN-TNIARVVDLYANLT 151
Query: 355 SILPPPHQLATGNVSQSPPINPPTNATDASAGGQQA 462
H T +V+ + N TN++ SA A
Sbjct: 152 G---SSHSHTTSDVASATNTN-ATNSSSPSAAAATA 183
>10_08_1005 -
22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 141 HNVCSVCGTRKSSSFKSGTNTKNV--G*KCSSN 233
H++ + CGT K+G+ TKN+ G CS N
Sbjct: 347 HSMMTSCGTSNRDKIKAGSLTKNLENGTSCSRN 379
>11_06_0750 + 26917239-26918071,26918319-26920773
Length = 1095
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 334 DANQNIQSILPPPHQLATGNVSQSPPINPPTNATDASAG 450
+A+Q + +I PPP +A G+ S S + PP A + G
Sbjct: 139 EAHQRVLTINPPPILIAGGS-SSSAAVAPPCRAARSPVG 176
>11_01_0445 - 3455449-3456096,3456348-3457958
Length = 752
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 11/43 (25%)
Frame = -2
Query: 205 FVFVPDLKEDDFLVPQTL--QTL---------CNLKYCYYSSI 110
+VF +L D FLVP+ L +TL CNLK+C Y+ +
Sbjct: 537 YVFRSELLPDSFLVPEVLFVETLKHAREQLKDCNLKWCRYNKL 579
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 298 LHRNLVYLASVADAN-QNIQSILPPPHQLATGNVSQSPPINPPTNATDA 441
LH AS D + + + LPPP +++ + SPP+ T T A
Sbjct: 39 LHSAHADAASADDEDDEGLDVELPPPPRISLSTSTPSPPVTTTTTTTSA 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,041,463
Number of Sequences: 37544
Number of extensions: 345907
Number of successful extensions: 1142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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