Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27f04
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    54   7e-08
Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     28   5.5  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    28   5.5  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    28   5.5  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    28   5.5  
Z96047-2|CAB09411.1|  566|Caenorhabditis elegans Hypothetical pr...    27   9.6  
X74027-1|CAA52188.1|  566|Caenorhabditis elegans lamin protein.        27   9.6  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      27   9.6  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    27   9.6  

>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 24/52 (46%), Positives = 38/52 (73%)
 Frame = +1

Query: 181 PLSPAQIQKMLDENAHLIQTIQEYQAKGQIMECHQYQQILHRNLVYLASVAD 336
           P   + +QK+LDEN+ LI  IQEY  + +  E  ++QQ+LHRNL++L+++AD
Sbjct: 6   PDQQSTVQKLLDENSRLIDIIQEYLNQSRADEAIKHQQLLHRNLLHLSNLAD 57


>Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical
           protein F54G8.2 protein.
          Length = 812

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 238 TIQEYQAKGQIMECHQYQQILHRNLVYLASVADANQNIQSILPPPH 375
           T+  +Q KG    CH Y  + HR +  LA   D    +  ILPP H
Sbjct: 347 TVGVFQGKG-CRWCHNY--VHHRCMSALAQECDLGALVHHILPPTH 389


>Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical
           protein T23F6.3 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 349 IQSILPPPHQLATGNVSQSPPINPPTNATDASAGGQQAY 465
           + ++ P P   ATG+  Q  P N     T  +A G++ Y
Sbjct: 101 VAAVAPDPTSAATGSQGQPTPQNAQNQPTIRAAAGREGY 139


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 322 ASVADANQNIQSILPPPHQLATGNVSQSPPINPP 423
           +S   A  +I    PPP  L T N+ Q+PP  PP
Sbjct: 188 SSSTSAGSSIPHAPPPPVPL-TSNIPQAPPAPPP 220


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 358 ILPPPHQLATGNVSQSPPINPPTNAT 435
           +LPP H   TG+ + SP  + P N T
Sbjct: 467 VLPPYHNFTTGSATVSPFASTPANMT 492


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 322 ASVADANQNIQSILPPPHQLATGNVSQSPPINPP 423
           +S   A  +I    PPP  L T N+ Q+PP  PP
Sbjct: 174 SSSTSAGSSIPHAPPPPVPL-TSNIPQAPPAPPP 206


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 322 ASVADANQNIQSILPPPHQLATGNVSQSPPINPP 423
           +S   A  +I    PPP  L T N+ Q+PP  PP
Sbjct: 174 SSSTSAGSSIPHAPPPPVPL-TSNIPQAPPAPPP 206


>Z96047-2|CAB09411.1|  566|Caenorhabditis elegans Hypothetical
           protein DY3.2 protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 121 NSNILNYTMSVAFAARGNRPPLSPAQIQKMLDENAHLIQTIQEYQAK--GQIMECH-QYQ 291
           N+ I      +AFA + ++  L   + ++ +D   +  Q   EYQ+K   QI E   Q++
Sbjct: 208 NNKIKALEEDLAFALQQHKGELEEVRHKRQVDMTTYAKQINDEYQSKLQDQIEEMRAQFK 267

Query: 292 QILHRN 309
             LH+N
Sbjct: 268 NNLHQN 273


>X74027-1|CAA52188.1|  566|Caenorhabditis elegans lamin protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 121 NSNILNYTMSVAFAARGNRPPLSPAQIQKMLDENAHLIQTIQEYQAK--GQIMECH-QYQ 291
           N+ I      +AFA + ++  L   + ++ +D   +  Q   EYQ+K   QI E   Q++
Sbjct: 208 NNKIKALEEDLAFALQQHKGELEEVRHKRQVDMTTYAKQINDEYQSKLQDQIEEMRAQFK 267

Query: 292 QILHRN 309
             LH+N
Sbjct: 268 NNLHQN 273


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
 Frame = +1

Query: 175  RPPLSPAQIQKMLDENAHLIQT--IQEYQAKGQI----MECHQYQQILHRN----LVYLA 324
            RPP+      +  + N H +    +Q+YQ   Q     M+  Q QQ   ++    LV   
Sbjct: 750  RPPMLQRSSSEQHNPNPHQMSQYQMQQYQQNQQFRMHQMQQQQQQQFQMQSPKNPLVPAY 809

Query: 325  SVADANQNIQSILPPPHQLATGNVSQSPPINPP 423
            +  D+++      PP  Q++T +   S P +PP
Sbjct: 810  TDEDSDEECDPPPPPKPQVSTSSRMSSVPSHPP 842


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
 Frame = +1

Query: 175  RPPLSPAQIQKMLDENAHLIQT--IQEYQAKGQI----MECHQYQQILHRN----LVYLA 324
            RPP+      +  + N H +    +Q+YQ   Q     M+  Q QQ   ++    LV   
Sbjct: 750  RPPMLQRSSSEQHNPNPHQMSQYQMQQYQQNQQFRMHQMQQQQQQQFQMQSPKNPLVPAY 809

Query: 325  SVADANQNIQSILPPPHQLATGNVSQSPPINPP 423
            +  D+++      PP  Q++T +   S P +PP
Sbjct: 810  TDEDSDEECDPPPPPKPQVSTSSRMSSVPSHPP 842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,551,021
Number of Sequences: 27780
Number of extensions: 298585
Number of successful extensions: 902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)