Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27e24
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-4|AAB92069.1|  181|Caenorhabditis elegans Hypothetical ...    56   3e-08
AF038618-5|AAO91720.1|   60|Caenorhabditis elegans Hypothetical ...    50   1e-06
AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical ...    30   1.1  
U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    28   6.0  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF038618-4|AAB92069.1|  181|Caenorhabditis elegans Hypothetical
           protein F42G8.10a protein.
          Length = 181

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = +2

Query: 245 KNWVSYGFDYTSKEED-TNAHHATFFFSVTLCIVFGGVCWAY--SPDVHM-RDWAQREAF 412
           + W+ +      + +D    H A F     L   F   CW     PD  M R+WA REA 
Sbjct: 83  REWIWFSQIAHDEHKDWARFHQAAFLLFTVLTTWF--TCWIMFARPDWPMGREWALREAH 140

Query: 413 LELRRREKAGLPPISPNFI--DPKLIKLPDESELCDVE 520
           LE+ RREKAGLP ISP+ I  D     LP + EL D +
Sbjct: 141 LEIARREKAGLPLISPDLIPRDRVAATLPSDEELRDFD 178


>AF038618-5|AAO91720.1|   60|Caenorhabditis elegans Hypothetical
           protein F42G8.10b protein.
          Length = 60

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
 Frame = +2

Query: 371 PDVHM-RDWAQREAFLELRRREKAGLPPISPNFI--DPKLIKLPDESELCDVE 520
           PD  M R+WA REA LE+ RREKAGLP ISP+ I  D     LP + EL D +
Sbjct: 5   PDWPMGREWALREAHLEIARREKAGLPLISPDLIPRDRVAATLPSDEELRDFD 57


>AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical
           protein C24D10.1 protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 164 NKVSRNISTSKKNSDTATTACETKTEDKNWVSYGFDYTSKEEDTNA 301
           NK  + +ST+ +N D AT    TKT  K   S G D   +E +  A
Sbjct: 15  NKDGKLMSTASRNGDEATKPNGTKTSKKRKPSRGNDDKGREPEPTA 60


>U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical
           protein T14B4.9 protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 311 TFFFSVTLCIVFGGVCWAYSPDVHMRDWAQREAFLELRRREKAGL 445
           TFFF +   +V   V ++ +P + M  W  +E  +  RR+E A L
Sbjct: 8   TFFFLLLTMLVCTIVIFSMAPRITMSFWTSKETNILWRRKETAHL 52


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 359 WAYSPDVHMRD---WAQREAFLELRRREKAGLPPISP 460
           W +S ++H+ D   WA R+   E ++ E+    P+SP
Sbjct: 360 WRHSLEIHVNDHRMWAMRKTAKETKKIEEKNPSPVSP 396


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 152 WNHFNKVSRNISTSKKNSDTATTACETKTEDKNWVS 259
           W  FN+V+ N++ S+   D A   C+TK  ++  V+
Sbjct: 171 WVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVT 206


>U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical
           protein M03A1.6a protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 VWNHFNKVSRNISTSKKNSDTATTACETKTEDKN 250
           V+ H+ K  +N++ +KKN D  T    +  +D+N
Sbjct: 576 VYKHYLKKLKNLNKAKKNKDDKTADARSGGDDEN 609


>U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical
           protein M03A1.6b protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 VWNHFNKVSRNISTSKKNSDTATTACETKTEDKN 250
           V+ H+ K  +N++ +KKN D  T    +  +D+N
Sbjct: 564 VYKHYLKKLKNLNKAKKNKDDKTADARSGGDDEN 597


>U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6d protein.
          Length = 762

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 VWNHFNKVSRNISTSKKNSDTATTACETKTEDKN 250
           V+ H+ K  +N++ +KKN D  T    +  +D+N
Sbjct: 573 VYKHYLKKLKNLNKAKKNKDDKTADARSGGDDEN 606


>U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6c protein.
          Length = 762

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 VWNHFNKVSRNISTSKKNSDTATTACETKTEDKN 250
           V+ H+ K  +N++ +KKN D  T    +  +D+N
Sbjct: 573 VYKHYLKKLKNLNKAKKNKDDKTADARSGGDDEN 606


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 131 PLVQRSVWNHFNKVSRNISTSKKNSDTATTACETKTED-KNWVSYGFDYTSKEEDT 295
           PLV  SV +HFN+VS+  S  +       +  + KT D  N  +  FD   K++ T
Sbjct: 45  PLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 281 KEEDTNAHHATFFFSVTLCIVFGGVCWAYSPDVHMRDWAQREAFLELRRREK 436
           +++ T A     F   +L  +F G  +       ++DWA+ E   E+  +EK
Sbjct: 485 RKDGTAAEWQNIFIGCSLAHIFSGSIFLLFGSGELQDWAKVEDDQEMNEKEK 536


>AF003144-1|AAB54196.2|  235|Caenorhabditis elegans Hypothetical
           protein C55C2.4 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 269 DYTSKEEDTNAHHATFFFSVTLCIVFG 349
           DY  +EED       F+  + LC+VFG
Sbjct: 175 DYDDEEEDQGNGGYGFYAEIYLCVVFG 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,740,903
Number of Sequences: 27780
Number of extensions: 298461
Number of successful extensions: 876
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)