Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27e21
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 663 TLGVCLSACSLPGQPAAV 716
           T  + +SACSLP +P  +
Sbjct: 441 TKDIPISACSLPCEPGMI 458


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 663 TLGVCLSACSLPGQPAAV 716
           T  + +SACSLP +P  +
Sbjct: 531 TKDIPISACSLPCEPGMI 548


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 331 PATAPSSIPEPMNPDAKGSCPDPPPPRMATLLLSSCLLMVMTRCFGCSCNCGYTATT 161
           PA + S  P P N +  GS P  PP   ++  L + +    T     +     TATT
Sbjct: 73  PAFSSSCDPVPGNLEQIGSRPLHPP--ASSTSLPATITTTTTTTTTTTATAAATATT 127


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 176  PTVATASETPGHHHQ 220
            PT  T+S++PG+  Q
Sbjct: 1279 PTTITSSQSPGNQQQ 1293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,741
Number of Sequences: 438
Number of extensions: 5192
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)