Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27e12
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 46 6e-06
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 40 3e-04
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 39 7e-04
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 38 0.001
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 38 0.002
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 37 0.003
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 35 0.008
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 35 0.011
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 34 0.019
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 33 0.025
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 33 0.033
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.043
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 32 0.057
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.30
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 27 1.6
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 27 1.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.1
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 4.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 6.5
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 45.6 bits (103), Expect = 6e-06
Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Frame = +2
Query: 188 WLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRILG 367
+++S+ + + G ++ L + +GRK I + ++G ++ +++ +++GR +
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVI 190
Query: 368 GMSAGGTVALGAIVIGEYSSPKYRG----MYLNMKTASVCLGGMLVHILGHFYN-WRTVA 532
G G + + + E + K RG +Y+ + TA + + H +N WR +
Sbjct: 191 GWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGWRWMV 250
Query: 533 LQATIPYIISMAIISTWPESPAWLISK 613
A +P + I+ PESP L+ K
Sbjct: 251 GLAMVPAAFQLFILIWLPESPRLLVKK 277
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 39.9 bits (89), Expect = 3e-04
Identities = 29/127 (22%), Positives = 59/127 (46%)
Frame = +2
Query: 68 VSAVLINMVGQGILLSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTL 247
V A+++ + + + T+ LP + A D D ++SW+ S+ ++
Sbjct: 99 VPALILTLFLAALDNTIVTTALPTI-AEDF---NDTSSSSWIGSAYVLASNAVLPAVGVF 154
Query: 248 MEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRILGGMSAGGTVALGAIVIGEYSS 427
GRK+ +I + ++G L N+ L++ R + G+ GG ++L I+I + +
Sbjct: 155 CNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISDITP 214
Query: 428 PKYRGMY 448
+ R MY
Sbjct: 215 LRTRPMY 221
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 38.7 bits (86), Expect = 7e-04
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Frame = +2
Query: 173 LDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMI 352
++ AS++ ++ I+ + L + +GR+ +G ++P L +
Sbjct: 65 MNNASYIVTAYLITNTAFQPLYGRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCM 124
Query: 353 GRILGGMSAGGTVALGAIVIGEYSSPKYRGMYLNMKT----ASVCLGGMLVHILGHFYNW 520
R L G+ GG + +I+ + S + RG + + LGG L ++ + W
Sbjct: 125 ARALAGIGGGGLGTMSSIISSDIVSLRERGTWQGITNIVWGIGGSLGGPLGGLIAQRWGW 184
Query: 521 RTVALQATIPYIISMAIISTW 583
RT A +P I I+ W
Sbjct: 185 RT-AFHFQVPMGILSTILVAW 204
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/109 (21%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Frame = +2
Query: 263 RKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRILGGMSAGGTVALGAIVIGEYSSPKYRG 442
R + + ++++ +IG++++ + I +IG + + + G L +V+G+ +S K+RG
Sbjct: 149 RPMTYTLVLLFYVIGFIVVASSSTISAYVIGSVFISIGSSGLDYLNTLVVGDLTSLKWRG 208
Query: 443 MYLNMKT----ASVCLGGMLVH-ILGHFYNWRTVALQATIPYIISMAII 574
+ + A+V G +V I+ + W +P +++ A+I
Sbjct: 209 FMTALLSTPYIATVWFTGFIVQGIIDSNWRWGYGMFAIIMPAVMTPAVI 257
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 37.5 bits (83), Expect = 0.002
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Frame = +2
Query: 191 LSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIMMPGLIGWLL-IYFGNNIPVLMIGRILG 367
++ V + G F+SS LM+ G++ + + LIG +L + + +M+ +I
Sbjct: 61 ITGMVNVGSFFGCFLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWT 120
Query: 368 GMSAGGTVALGAIVIGEYSSPKYRGMYLNMKTASVCLG-------GMLVHILGHFYNWRT 526
G+S G L E + RG + +V G M H L WR
Sbjct: 121 GLSIGALSVLAPGFQSEVAPADLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWR- 179
Query: 527 VALQATIPY-IISMAIISTWPESPAWLIS 610
V++ + + II+ IS PESP +LIS
Sbjct: 180 VSMGINLLWGIITFIGISFLPESPRYLIS 208
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 36.7 bits (81), Expect = 0.003
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +2
Query: 179 TASWLSSSVGISG-IPGFFMSSTLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIG 355
T S L+ +V + G I G + + L E GRK+ I M I + + +I +M+
Sbjct: 170 TVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMC 229
Query: 356 RILGGMSAGGTVALGAIVIGEYSSPKYRGMYLNMKTASVCLGGMLVHILGHF 511
R G A + + A + S K+RG + + A V G ++ I+G F
Sbjct: 230 RFFSGFFASAPLTVVAAAFADMYSNKHRGTAITIFAALVFDGPLVSPIIGGF 281
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 35.1 bits (77), Expect = 0.008
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 4/158 (2%)
Frame = +2
Query: 44 PFLKQTWAVSAVLINMVGQGILLSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIP 223
PF+ T A+ A+ ++ GI+ T +LP I D S +S+ + + +
Sbjct: 14 PFIIGTIAI-ALFTDLFLYGII----TPILPFSLVDRVGISPDR-VQSVISTLLAVYAVA 67
Query: 224 GFFMSSTLMEAYGRKVAHFIIMMPGLI----GWLLIYFGNNIPVLMIGRILGGMSAGGTV 391
SS + + + + M+ GLI L+ FGN++P+L++ R+L G+SA
Sbjct: 68 NIAASSPIGFLADKFLTRKVPMLIGLIFLTSATALLTFGNSVPMLIVARVLQGLSAAVVW 127
Query: 392 ALGAIVIGEYSSPKYRGMYLNMKTASVCLGGMLVHILG 505
+G ++ + G + + LG ++ + G
Sbjct: 128 TVGLALLVDVVGADNVGSTMGGIFGFISLGEIIAPVFG 165
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 34.7 bits (76), Expect = 0.011
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +2
Query: 185 SWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRIL 364
SW+ ++ ++ + E GRK+ + ++ L G + N+ L++ R +
Sbjct: 128 SWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAV 187
Query: 365 GGMSAGGTVALGAIVIGE----YSSPKYRG-MYLNMKTASVCLGGMLVHILGHFYNWRTV 529
G+ GG ++L IVI + + P Y G M + ASV +G ++ + WR +
Sbjct: 188 QGIGGGGIMSLVTIVIADITPLQTRPYYTGCMGVTWGVASV-MGPLIGGAISQNTTWRWI 246
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 33.9 bits (74), Expect = 0.019
Identities = 21/89 (23%), Positives = 40/89 (44%)
Frame = +2
Query: 245 LMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRILGGMSAGGTVALGAIVIGEYS 424
+ E GRK +I + + + + +I +MI R GG A + + A +
Sbjct: 197 MSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYGACVPLCVVAAAFADMY 256
Query: 425 SPKYRGMYLNMKTASVCLGGMLVHILGHF 511
+YRG + + A + +G ++ I+G F
Sbjct: 257 PNRYRGTAITIFAAVIFVGPLVAPIVGGF 285
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 33.5 bits (73), Expect = 0.025
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +2
Query: 185 SWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRIL 364
SW+ ++ ++ + E GRK+ + ++ L G + N+ L++ R +
Sbjct: 128 SWIGTAYTLAQTSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAV 187
Query: 365 GGMSAGGTVALGAIVIGE----YSSPKYRG-MYLNMKTASVCLGGMLVHILGHFYNWRTV 529
G+ GG +L IVI + + P Y G M + ASV +G ++ + +WR +
Sbjct: 188 QGIGGGGITSLVTIVIADITPLQTRPYYTGCMGVTWGLASV-MGPLIGGAISQKASWRWI 246
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 33.1 bits (72), Expect = 0.033
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +2
Query: 176 DTASWLSSSVGISGIP-GFFMSSTLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMI 352
+T L +++ + G+ G + S L E YGR+ + + + N+ + ++
Sbjct: 74 ETLVVLGATLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVV 133
Query: 353 GRILGGMSAGGTVALGAIVIGEYSSPKYRGMYLNMKTASVCLGGMLVHILGHF 511
R G + +GA + + S + RG Y+ + +CLG + I F
Sbjct: 134 FRFFSGFFGSVGLGIGAGSLSDMFSKRDRGKYIGIYFLGICLGPAIAPIASGF 186
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.043
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 62 WAVSAVLINMVGQGILLSYTTS--LLPALQAPDSPI-PTDLDTASWLSSSVGISGIPGFF 232
WA L + G G + SYT S L+ LQ + PI P LD S + + + I GF
Sbjct: 195 WAKQRALCDAAGSGTITSYTISCMLVNFLQTRNPPILPAMLDLMSNDDNKMFVDDIVGFK 254
Query: 233 MSSTLME-AYGRKVAHF 280
+TL + + GR + F
Sbjct: 255 EKATLNKTSLGRLLIDF 271
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 32.3 bits (70), Expect = 0.057
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 4/137 (2%)
Frame = +2
Query: 185 SWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRIL 364
SW +++ IS + + YGRK IG L ++ L+ R +
Sbjct: 127 SWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAI 186
Query: 365 GGMSAGGTVALGAIVIGEYSSPKYRGMYLNMKTASVCLGGMLVHILGHF----YNWRTVA 532
G+ GG + +I++ + K RG Y + +G L +G + Y WR +
Sbjct: 187 AGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVGGYFADQYTWR-IG 245
Query: 533 LQATIPYIISMAIISTW 583
+P +I++A + +
Sbjct: 246 FLIQVP-LIAIAFLCVY 261
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 29.9 bits (64), Expect = 0.30
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Frame = +2
Query: 59 TWAVSAVLINMVGQGILLSYTTSLLPALQAPDSPIP--TDLDTA-SWLSSSVG-ISGIPG 226
+W + + + + + L + +L P +PD PI ++ T S + ++ G ++ G
Sbjct: 141 SWGMIEIPLLFLLRQELCAIHYNLDPTQLSPDDPICRLAEITTGVSKVRAAFGSLAAFLG 200
Query: 227 FFMSS---TLMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIP-----VLMIGRILG-GMSA 379
F ++ T+ + YGR++ FI + L+G L + + + P VL + G G
Sbjct: 201 LFSTAYYGTMGDIYGRRLVLFITVSFLLLGDLWLLYQSYAPKHPYFVLFAAALKGLGGYI 260
Query: 380 GGTVALGAIVIGEYSSPKYRGMYLNMKTASVCLGGMLVHILGHF 511
VA + + S ++R YL + A+ LG L L F
Sbjct: 261 STVVASQNSFVADCSKTEFRAWYLGLNFAAYHLGTALGPSLSGF 304
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 77 VLINMVGQGILLSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEA 256
++ + +GQ + SY +L + P+ P+P + SW S V I SS ++
Sbjct: 163 LIFSQLGQALRWSYGYRILLSPNQPEDPLP--IGNRSWSHSDVNEEEIQNLLASSANVDG 220
Query: 257 YGRKV 271
V
Sbjct: 221 VQNSV 225
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 251 EAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRILGGMSAGGTVALGAIVIGEYSSP 430
+ +GR + + + ++G+L + F NI + + IL G L ++I + SS
Sbjct: 126 DVFGRSESLSLALGMTVLGYLSLAFSRNIQMFTVAYILYICGQTGLGLLSQLIIADTSSL 185
Query: 431 KYRGM 445
RG+
Sbjct: 186 LNRGI 190
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 410 IGEYSSPKYRGMYLNMKTASVCLGGMLVHILGHFYNWRTVALQATIPY 553
I ++ PKY ++ S+ G L H+LG+ ++ +A++ PY
Sbjct: 1681 ISKFLGPKYFSFIISQLQTSLKRGYQL-HVLGYTVHYLLLAIEDVYPY 1727
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +2
Query: 245 LMEAYGRKVAHFIIMMPGLIGWLLIYFGNNIPVLMIGRILGGMSAGGTVALGAIVIGEYS 424
L + +GR A ++ L+G +L+ N+ G +L G + I + + S
Sbjct: 152 LSDVFGRLEAFLFSLLLYLVGLILMAASTNVQTYAGGSVLYNAGYTGVELIMTIFMADTS 211
Query: 425 SPKYRGMYLNM 457
S R + L +
Sbjct: 212 SMANRSLVLGI 222
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + + D+ T SW++ +V SG GF ++T+ G ++
Sbjct: 729 IGFTTTIATPIGSTAGTVLVDVPTPSWVTETV-TSGSVGF--TTTIATPIGSTAGTVLVD 785
Query: 290 MP 295
+P
Sbjct: 786 IP 787
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + + D+ T SW++ +V SG GF ++T+ G ++
Sbjct: 765 VGFTTTIATPIGSTAGTVLVDIPTPSWVTETV-TSGSVGF--TTTIATPVGTTAGTVLVD 821
Query: 290 MP 295
+P
Sbjct: 822 IP 823
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + + D+ T SW++ +V SG GF ++T+ G ++
Sbjct: 873 VGFTTTIATPIGSTAGTVLVDIPTPSWVTETV-TSGSVGF--TTTIATPVGTTAGTVLVD 929
Query: 290 MP 295
+P
Sbjct: 930 IP 931
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + D+ T SW++ +V SG GF ++T+ G ++
Sbjct: 801 VGFTTTIATPVGTTAGTVLVDIPTPSWVTETV-TSGSVGF--TTTIATPVGTTAGTVVVD 857
Query: 290 MP 295
+P
Sbjct: 858 VP 859
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + D+ T SW++ +V SG GF ++T+ G ++
Sbjct: 945 VGFTTTIATPIGTTAGTVLVDIPTPSWVTETV-TSGSVGF--TTTIATPVGTTAGTVLVD 1001
Query: 290 MP 295
+P
Sbjct: 1002 IP 1003
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + + D+ T SW++ +V SG GF ++T+ G ++
Sbjct: 628 VGFTTTIATPVGSTAGTVVVDIPTPSWVTETV-TSGSVGF--TTTIATPVGSTAGTVLVD 684
Query: 290 MP 295
+P
Sbjct: 685 IP 686
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + D+ T SW++ +V SG GF ++T+ G +I
Sbjct: 736 VGFTTTIATPIGTTAGTVLVDIPTPSWVTETV-TSGSVGF--TTTIATPVGTTAGTVLID 792
Query: 290 MP 295
+P
Sbjct: 793 VP 794
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +2
Query: 110 LSYTTSLLPALQAPDSPIPTDLDTASWLSSSVGISGIPGFFMSSTLMEAYGRKVAHFIIM 289
+ +TT++ + + D+ T SW++ +V SG GF ++T+ G ++
Sbjct: 700 VEFTTTIATPVGTTAGTVVVDIPTPSWVTETV-TSGSVGF--TTTIATPIGTTAGTVLVD 756
Query: 290 MP 295
+P
Sbjct: 757 IP 758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,212
Number of Sequences: 5004
Number of extensions: 66362
Number of successful extensions: 201
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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