Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27e02
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 35 0.008
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 35 0.011
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.23
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 29 0.69
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.6
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 27 2.1
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 3.7
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 25 6.4
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 25 8.5
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 8.5
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 8.5
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 35.1 bits (77), Expect = 0.008
Identities = 28/108 (25%), Positives = 53/108 (49%)
Frame = +2
Query: 206 YMARSSLGVAILAMTDVSRKNDTNVEVYNWDKKTQGLILSSFFWGYMTMQIPAGLLAKKY 385
++ R+++G A + V K D ++ Y + +S F+ Y+T + P+ LL KK+
Sbjct: 56 FLDRANIGNAAV----VGLKEDLKLQAYQYSAA-----VSVFYATYITAETPSVLLVKKF 106
Query: 386 GGKPILLVALLANGSLCVLLPTVASLGGWPMICLCRVLMGLTQACLFP 529
G P ++ + G V + T W ++ L R+L+G+ + FP
Sbjct: 107 G--PHYYLSAMIIGWSLVTIFTCFVRHYWSLV-LTRLLLGICEGGFFP 151
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 34.7 bits (76), Expect = 0.011
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Frame = +2
Query: 182 MSFCMIALYMARSSLG-VAILAMTDVSRKNDTNVEVYNWDKKTQGLILSSFFWGYMTMQI 358
+ F + ++ RS++G A+ MT+ + +Y + + +S F+ Y+ ++
Sbjct: 65 IGFLYLMAFLDRSNIGNAAVAGMTEA-------LSLYG---ERLNVAVSIFYVLYILVET 114
Query: 359 PAGLLAKKYGGKPILLVALLANGSLCVLLPTVASLGGWPMICLCRVLMGLTQACLFPASH 538
P+ +L K+ +L A + ++S GG + R+++GL + CLFPA +
Sbjct: 115 PSVVLVKRIKASRMLAFISFAWSMTVLFSGFMSSYGG---LIATRLILGLLEGCLFPALN 171
Query: 539 TLLGKMVTSK 568
L T K
Sbjct: 172 LYLTTHYTRK 181
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 30.3 bits (65), Expect = 0.23
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 323 SSFFWGYMTMQIPAGLLAKKYGGKPILLVALLANGSLCVLLPTVASLGGWPMICLCRVLM 502
+SF+ G+M +P L +K+ + ++A G L L V S + R L+
Sbjct: 94 TSFYLGFMVFSLPLSTLLQKFPLSKVTSAFIVAWGILMTLTCLVHSYASY---IATRTLL 150
Query: 503 GLTQACLFPA 532
G+ ++ + PA
Sbjct: 151 GILESVITPA 160
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 28.7 bits (61), Expect = 0.69
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 359 PAGLLAKKYGGKPI-LLVALLANGSLCVLLPTVASLGGWPMICLCRVLMGLTQACLFPAS 535
P G LA K+ + + +L+ L+ S LL S+ PM+ + RVL GL+ A ++
Sbjct: 74 PIGFLADKFLTRKVPMLIGLIFLTSATALLTFGNSV---PMLIVARVLQGLSAAVVWTVG 130
Query: 536 HTLLGKMV 559
LL +V
Sbjct: 131 LALLVDVV 138
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 27.5 bits (58), Expect = 1.6
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Frame = +2
Query: 83 EKKFAK-MLRREPGRLSVSAKKFGFGIRHVQMICMSFCMIALYMARSSLGVAILAMTDVS 259
EK+ +K +++ E L V +K + H +++ + A M ++ LG +I +
Sbjct: 17 EKESSKDLVQNEDTPLPV--QKISMSLFH-EIVFVFIACTAQLMTQAGLGQSIAPNNIIG 73
Query: 260 RK-NDTNVEVYNWDKKTQGLILSSFFWGYMTMQIPAGLLAKKYGGKPILLVALLANGSLC 436
+ TN +W + L + +F + AG L YG K + ++ +
Sbjct: 74 KSLGTTNPGQLSWFPASYSLTVGTFI-------LIAGRLGDIYGHKKMFVLGYIWFCIWS 126
Query: 437 VLLPTVASLGGWPMICLCRVLMGLTQACLFPASHTLLGKM 556
++ M +CR L G+ A L P + LLG++
Sbjct: 127 LISGFSYYAKSVIMFDVCRALTGIAPAFLLPNALALLGRV 166
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 525 KRQACVKPMSTRQRHIIGQPPKLATVGNSTQSDPFANNATSSI 397
KR C K + + + + G S+Q+D FA+N ++S+
Sbjct: 65 KRDLCTKTKHIEELQTLLSNANIMSDGASSQNDAFAHNPSTSV 107
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 259 RNIGHGQNRDSKTAARHVQSYHAERHAYHLYMTNAEAEFLSRNTESSRFPTQHLSKF 89
+NI +G NRD+ + + ++ E L NTE + PT +S+F
Sbjct: 126 KNIENGGNRDTSSRIEELSEEEINDSTKNINYKAPEMGSLPSNTEFTSTPTLGVSEF 182
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = -1
Query: 492 RQRHIIGQPPKLATVGNSTQSDPFANNATSSIGFPP--YFFARSPAGICIVM*PQKNDDN 319
R H G P S++ D N S I PP Y +V+ + D+N
Sbjct: 49 RSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGSAVVVLKAKHGDEN 108
Query: 318 IRP*VFLSQ 292
IR + +SQ
Sbjct: 109 IRITMNVSQ 117
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 68 KKMVD-EKKFAKMLRREPGRLSVSAKKFGFGIRHVQMICMSFCMIALYMARSSLGVAILA 244
K MVD E + + L ++ K G G + C SF LYM G A +
Sbjct: 222 KGMVDFESELGQYLHHSWAECLLAFDKIGSGSGDLSK-CESFLGDILYMVSKEPGKACMN 280
Query: 245 MTDVS 259
M D+S
Sbjct: 281 MYDIS 285
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 257 SRKNDTNVEVYNWDKKTQG 313
+ KND++ +NW KT G
Sbjct: 417 AHKNDSSARTWNWKSKTLG 435
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 149 GFGIRHVQMICMSFCMIALYMARSSLGVA 235
GFG+ ICM++C ++ +GVA
Sbjct: 445 GFGLGPTVPICMAWCSASMAKTYGDVGVA 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,444
Number of Sequences: 5004
Number of extensions: 55621
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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