Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27e01
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    29   0.54 
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    27   2.2  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   3.8  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   5.0  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   5.0  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   6.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   6.6  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   8.8  

>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 309 LVDLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 452
           + D++Q +   S C  ++V   YGC++DG   +I++E +       L K
Sbjct: 49  ITDIEQEVFMLSNCNSSNVIQYYGCFVDGYTLWILMEHMDGGSVSGLLK 97


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 446 NETPYKVRTGFSSRDTSTFARSIDDFAN 529
           ++ P K   GF   +TSTF +  DDF++
Sbjct: 375 SDLPNKTAFGFMRSNTSTFNQKCDDFSS 402


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 381 YLDG--VNDYIVLE-DLGESRCKSLTKHPTKCERDSVLETLAHLHAVSMTLRIKKPD 542
           Y++G  + D+++    + E  CK L K         +LETL HLH   +T R  KP+
Sbjct: 250 YVEGGDLMDFLIANGSIDEQDCKPLLKQ--------LLETLLHLHKQGVTHRDIKPE 298


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 381 YLDGVNDYIVLEDLGESRCKSLTKHPTKCERDS 479
           YLD ++DY    D GE+  +    HP     D+
Sbjct: 717 YLDNLSDYKFSSDAGETYFEKAAPHPFVYSEDT 749


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 141 GEGLLSAVYRIKVTGKRYSTSFIGKGFVDNERIKNSLNCAEL 266
           G   L  +  IK+ G +   SF+ +GF+ N+ I   +NC ++
Sbjct: 188 GSTNLDNIQIIKILGGKLDDSFLDEGFILNKTI--GVNCPKV 227


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 208  IKDVEYLLPVTLIL*TALRRPSPFG 134
            I+D+E+ +PVTL + +  R   P+G
Sbjct: 1202 IRDIEFRIPVTLSILSERRAYHPYG 1226


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 186 KRYSTSFIGKGFVDNERIKNSLNCAEL 266
           K+Y   F GK F+D  R  N  + + L
Sbjct: 594 KKYYIEFGGKAFIDQSRYNNQYDSSSL 620


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 90  DSDEDIENIELTKAAP 137
           +SDEDIENI L ++ P
Sbjct: 104 ESDEDIENISLPESHP 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,661
Number of Sequences: 5004
Number of extensions: 45856
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)