Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27d17
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 35 0.074
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 34 0.098
07_03_0899 + 22421038-22422642 33 0.17
07_03_0898 - 22403337-22404950 33 0.17
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 33 0.30
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 32 0.40
01_03_0126 + 12741397-12743022 32 0.40
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 31 0.91
07_03_0896 + 22373348-22374946 31 0.91
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 31 1.2
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 30 1.6
06_01_0835 - 6315762-6316844 30 1.6
03_01_0256 - 1992298-1993878 30 2.1
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 29 2.8
08_02_0378 + 16496197-16496386,16496929-16497007,16497201-164973... 29 2.8
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 29 3.7
08_02_1613 + 28236989-28238593 29 4.9
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 4.9
04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332... 29 4.9
02_05_0156 + 26341904-26342801,26343469-26344148 29 4.9
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 28 6.4
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290... 28 6.4
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 28 6.4
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 25 6.6
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 28 8.5
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 34.7 bits (76), Expect = 0.074
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 527 ITSEMDWICDRGSYQATAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTLIGCLGGIL 703
I + + D Q T ++ VG+IIG GW+ D YGR + + + ++ LG ++
Sbjct: 59 IRDDFPAVRDNYFLQETIVSMALVGAIIGAAGGGWINDTYGRRKSTLVADMLFALGSLV 117
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 569 QATAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTLIGCLGGILTTFA 715
++ ++ F G +IG G+V+D+YGR ++STL G L+ F+
Sbjct: 253 ESLLSSVVFAGMLIGASGWGFVSDKYGRRICLLFSTLFASGMGFLSAFS 301
>07_03_0899 + 22421038-22422642
Length = 534
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 491 WEFNKTEIPYPTITSEMDWICDRG--SYQATAQALFFVGSIIGGFLIGWVADR-YGRLPA 661
WE+++ ++ SE C G + + + FF G++ GGFL+ +AD GR
Sbjct: 101 WEWDRPA--ETSVVSEWALKCGGGGPALVSLPASSFFAGNLAGGFLLTTLADTLLGRRKM 158
Query: 662 AVYSTLIGCLGGILTTFA 715
V S + + G+LT F+
Sbjct: 159 LVLSLVTMSVAGVLTVFS 176
>07_03_0898 - 22403337-22404950
Length = 537
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 590 FFVGSIIGGFLIGWVADRY-GRLPAAVYSTLIGCLGGILTTFA 715
FF G++ GGFL+ +AD + GR V S + G+LT F+
Sbjct: 126 FFAGNLAGGFLLTTLADTHLGRRKMLVLSLATMSVAGVLTAFS 168
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 554 DRGSYQATAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTL----IGCLGGILTTF 712
D G Y A +F+G I G AD+YGR P V S L L G+ TT+
Sbjct: 81 DIGFYAGFVGATYFLGRTISAVPWGIFADKYGRKPCIVISILSVIVFNTLFGLSTTY 137
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 488 GWEFNKTEIPYPTITSEMDWICDRGSYQATAQALFFVGSIIGGFLIGWVADRY-GRLPAA 664
GWE+ + SE +C QA+FF G +IG + G ++D + GR +
Sbjct: 93 GWEWASGRAS--STVSEWGLVCGERYKVGLVQAIFFAGCMIGAGVFGHLSDSFLGRKGSL 150
Query: 665 VYSTLIGCLGGILTTFA 715
++ + G+LT A
Sbjct: 151 QVVCVLNGVFGMLTAMA 167
>01_03_0126 + 12741397-12743022
Length = 541
Score = 32.3 bits (70), Expect = 0.40
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 491 WEFNKTEIPYPTITSEM-DWICDRGSYQATAQAL-FFVGSIIGGFLIGWVADRY-GRLPA 661
WE+++ P TS + DW + G + A FF G++ GGFL+ +AD + GR
Sbjct: 102 WEWDR-----PAETSVVSDWALNCGPALVSLPASSFFAGNLAGGFLLATLADTHLGRRKM 156
Query: 662 AVYSTLIGCLGGILTTFA 715
+ S + + LT F+
Sbjct: 157 LLLSLVTMSVAAALTAFS 174
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 554 DRGSYQATAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTL 679
D G+Y A + VG G VADR GR P ++S L
Sbjct: 37 DIGNYAGFLGASYMVGRSFAAIFWGVVADRIGRKPVIMFSIL 78
>07_03_0896 + 22373348-22374946
Length = 532
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 524 TITSEMDWICDRGSYQATAQALFFVGSIIGGFLIGWVADR-YGRLPAAVYSTLIGCLGGI 700
++ SE C + + + FF G + GGFL+ +AD GR + S + G+
Sbjct: 103 SVVSEWALKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLVSLASMSVAGV 162
Query: 701 LTTFA 715
LT F+
Sbjct: 163 LTAFS 167
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 575 TAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTLIGCLGGILTTFA 715
T ++ G+I+G GW+ D++GR P+ + + + G ++ A
Sbjct: 70 TIVSMAVAGAIVGAGFGGWMNDKFGRKPSILIADSLFLAGALIMALA 116
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 560 GSYQATAQALFFVGSIIGGFLIGWVADRYGR 652
G+ + ++ F G +IG L G ++DRYGR
Sbjct: 68 GAAEGLVSSVVFAGMLIGACLGGLISDRYGR 98
>06_01_0835 - 6315762-6316844
Length = 360
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 290 PSPNHWCWVPELANLTDTERRTLAIPIDDSTKFGYSHCQVYDANWDEVL 436
P P +PE+ANL TE P D+S F C ++ +WD +L
Sbjct: 316 PPPPPPAALPEMANLDFTEA-----PWDESDAFHLYKCPSWEIDWDSIL 359
>03_01_0256 - 1992298-1993878
Length = 526
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 572 ATAQALFFVGSIIGGFLIGWVADRYGR 652
A + FVG++ G GW+ DR GR
Sbjct: 71 AAVNGVAFVGTLTGQLFFGWLGDRVGR 97
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 402 QCEYPNFVESSIGIANVLRSVSVKFASSGTQHQW 301
+C + VE G+ L+ V AS GT+H+W
Sbjct: 641 KCHAESIVEKCGGLPLALKIVGQAMASKGTEHEW 674
>08_02_0378 +
16496197-16496386,16496929-16497007,16497201-16497300,
16499446-16499492,16499583-16499703,16500022-16500108,
16500401-16500484,16500649-16500702,16501575-16501619,
16502076-16502156,16502557-16502602,16502696-16502748
Length = 328
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 542 DWICDRGSYQATAQALF-FVGSIIGGFLIGWVADRY-GRLPAAVYSTLIGCLGGILT 706
D++CDRG Q F +G +GG L+ + Y LP + +S L+ G LT
Sbjct: 110 DYMCDRGQISLGVQVSFGVIGLGVGGTLLSYGFGAYFNLLPGSEWSALMLTYGFPLT 166
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 554 DRGSYQATAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTLIGCL 691
D G Y A + G + + G VAD+YGR P + TLI +
Sbjct: 133 DIGFYAGFVGASYMFGRALSSVIWGIVADKYGRKPIIII-TLISII 177
>08_02_1613 + 28236989-28238593
Length = 534
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 572 ATAQALFFVGSIIGGFLIGWVADRYGR 652
A+ + FVG++ G GW+ D+ GR
Sbjct: 76 ASVNGVAFVGTLSGQLFFGWLGDKLGR 102
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 599 GSIIGGFLIGWVADRYGR 652
G+IIG + GW DRYGR
Sbjct: 78 GAIIGAAIGGWANDRYGR 95
>04_03_0743 +
19231835-19232204,19232889-19233061,19233200-19233297,
19233970-19234107,19234266-19234455,19234875-19235007,
19235095-19236029
Length = 678
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 521 PTITSEMDWICDRGSYQATAQALFFVGSIIGGFLIGW-VADRYGRLPAAVYSTLIGCLGG 697
P I ++ W +Y A L F S G L W +A YG++ ++++L+G GG
Sbjct: 411 PMIFPQVKWYLVLCAY-VVAPLLAFCNSY-GCGLTDWNLASTYGKIGLFIFASLVGRSGG 468
Query: 698 ILTTFA 715
++ A
Sbjct: 469 VIAGLA 474
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 584 ALFFVGSIIGGFLIGWVAD 640
ALF VG IIGG L G+++D
Sbjct: 316 ALFDVGGIIGGILAGFISD 334
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 584 ALFFVGSIIGGFLIGWVADRYGRLPAAVYS 673
++ FVG ++G + G V+D YGR A + S
Sbjct: 91 SVVFVGMLVGAYSWGIVSDNYGRRQAVMPS 120
>05_06_0136 +
25928152-25928659,25928767-25928899,25928987-25929058,
25929150-25929221,25929507-25929670,25929760-25930025,
25930115-25930241,25930599-25930667,25930765-25930957,
25931053-25931299,25931342-25931470,25932367-25932654
Length = 755
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 398 HCQVYDANWDEVLIAGQIPNSTWPTKACEHGWEFNKTEIPY 520
HC V DAN + PNS++ T A +H + ++ + +
Sbjct: 696 HCAVNDANNNFYTSNNSKPNSSYDTYAADHSIDVSQNSVAF 736
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 584 ALFFVGSIIGGFLIGWVADRYGR 652
++ FVG +IG + G V+D YGR
Sbjct: 69 SIVFVGMLIGAYTWGVVSDNYGR 91
>07_03_1304 -
25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 296 PNHWCWVPELANLTD 340
P++WCW PE + + D
Sbjct: 807 PSYWCWNPEESTVHD 821
Score = 21.0 bits (42), Expect(2) = 6.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Frame = +2
Query: 245 LFGVFVYYSQMFITEPSPNHWCW 313
LF + Y + + N WCW
Sbjct: 753 LFTLLAVYKEWEDEHENRNTWCW 775
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 554 DRGSYQATAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTL 679
D G Y A +F+ G AD+YGR P V S L
Sbjct: 34 DIGFYAGFVAASYFLARTFSSVPWGIFADKYGRKPCIVISIL 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,795,517
Number of Sequences: 37544
Number of extensions: 442494
Number of successful extensions: 1188
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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