Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27d15
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 32 0.25
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553 29 1.7
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 29 2.3
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 29 3.1
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 4.0
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 28 4.0
01_06_1831 + 40198371-40198625,40199614-40200141 28 5.3
04_01_0630 - 8354628-8355803,8355837-8355926 27 9.3
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 27 9.3
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -2
Query: 510 FFISQIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPDLTHLNHPIHPIRKI 349
F +S +H W + V+Y DL KI + A+ ++++ + D ++ N+ + I +I
Sbjct: 700 FLLSNLHDWKPENSVRYSDLPKIDKYALFQLENVVTSMKD-SYENYQFYKIYQI 752
>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
Length = 362
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 358 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 444
DR + V++ W G +LDL+ +F+N
Sbjct: 87 DRTVIITSVNEAWAAPGSLLDLYRDSFKN 115
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 310 CVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHGAFRNF 447
C+ + + YSN S++ + +V V +W + K ++FHG +F
Sbjct: 259 CIAEPDDYSN---SDSNKEWPLVTVKTIWEMREKHKNIFHGKIGDF 301
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 519 NKTFFISQIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPDL 388
+K ++ + K+Y+ K YPD+ IS + I A NP DL
Sbjct: 393 SKPYYKEKYVKFYSAIKASYPDIKIISSCDISSIS--AVNPADL 434
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 NAIRENAETSNVKDKNTTANDLDKPVDYENKEECFQI-GHSCT 134
NA E+ V+ K ++AND D P+ K I GHS T
Sbjct: 646 NAKESKDESPQVEPKPSSANDCDNPISQVAKRASDNIRGHSST 688
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 358 DRVYRMVEVSQVWRVSGKMLDLFHGAFR 441
DR M +++ W G +LDLF +FR
Sbjct: 113 DRTVIMTQINLAWTKPGSLLDLFFESFR 140
>01_06_1831 + 40198371-40198625,40199614-40200141
Length = 260
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 358 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 444
D+ + V+ W G +LDLF +F N
Sbjct: 102 DKTVIITSVNDAWAAPGSLLDLFRDSFHN 130
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 126 SCTNHKDCCTNACLGYAK--KCVSGSG*KRIKNL 221
SC N D T + L Y+ KCV G G +R+KNL
Sbjct: 378 SCDNLSDLFTKS-LPYSTFFKCVEGIGMRRLKNL 410
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 397 SRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAP 296
+R + PQ Y P P+ LN F S+R+ P
Sbjct: 221 ARDEQPQIQYVPLPEPMPLNKESFRPSNRSESCP 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,775
Number of Sequences: 37544
Number of extensions: 309018
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -