Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27d13
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    92   7e-20
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    28   1.3  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.2  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   9.1  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 70/179 (39%), Positives = 99/179 (55%), Gaps = 8/179 (4%)
 Frame = +2

Query: 119 PFTKVEESFNIQAVHDILYHRHNLSEYDHNEFPGVVPRTFIGPLIISMLCSPAVGVLFLS 298
           PFTKVEESF +QA+HDI  +R +LS+YDH EFPG V R+FI  L I++L    +   F++
Sbjct: 28  PFTKVEESFAMQAIHDIQTYRWDLSKYDHLEFPGAVKRSFIPSLFIAVL--SYIPSWFVN 85

Query: 299 GFNKFWVQYAVRLTLALTVIVTWSRLRNV---IQKQFGNTFAWWYSLITITQFHFMFYMS 469
                    A R T+     ++W  + +V   I K+FG      + L +  QFH ++YMS
Sbjct: 86  PL------LAARWTIG---YLSWESMNSVSCSISKRFGTLSGALFILFSCAQFHLVYYMS 136

Query: 470 RPLPNIMVL-----PLVLLAYEGWFSGSNKQFIISAGAAIVIFRSELAMLFGLFLIMNL 631
           RPL NI  L      L LL    ++   +   I+   AAIV  RSE+A+L  + LI+ L
Sbjct: 137 RPLSNIFGLIATNHSLSLLLKNNYYGSIS---ILVFAAAIV--RSEIALLL-MCLILPL 189


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 482 NIMVLPLVLLAYEGWFSGSNKQFIISAGAAIVIF 583
           NI  + L+L  YE WF  S K+ I++ GA I  F
Sbjct: 110 NIFSMWLLLATYETWFR-SIKEVIVACGAGIRSF 142


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 222 LCREHLLVRSLFRCCVLQLLVFYFFLGSINF 314
           L  + + V+  F CC  +  +FYFF GS+ F
Sbjct: 15  LSSKRIEVKKSF-CCSSEGPLFYFFFGSLTF 44


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 217 GSCAANIYWSAHYFDAVFSSCWCFISFWV 303
           G C A  YWS   F  +++     I FW+
Sbjct: 395 GLCGA-YYWSPKMFGLMYNETLASIQFWI 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,229
Number of Sequences: 5004
Number of extensions: 59337
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)