Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27d13
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical pr... 163 7e-41
AF068721-4|AAC19260.1| 298|Caenorhabditis elegans Hypothetical ... 32 0.40
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr... 31 0.91
AL110482-4|CAB60337.1| 371|Caenorhabditis elegans Hypothetical ... 29 3.7
AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical ... 29 3.7
AL110484-9|CAB54400.1| 77|Caenorhabditis elegans Hypothetical ... 28 4.9
AF106577-5|AAC78192.2| 353|Caenorhabditis elegans Hypothetical ... 28 4.9
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ... 28 4.9
U23521-2|AAC46815.2| 316|Caenorhabditis elegans Hypothetical pr... 27 8.5
U23521-1|ABD63220.1| 348|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical... 27 8.5
AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine re... 27 8.5
>U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical
protein ZC513.5 protein.
Length = 492
Score = 163 bits (397), Expect = 7e-41
Identities = 78/182 (42%), Positives = 115/182 (63%), Gaps = 2/182 (1%)
Frame = +2
Query: 80 LLYIVASLHLLLCPFTKVEESFNIQAVHDILYHRH-NLSEYDHNEFPGVVPRTFIGPLII 256
++ IV +H++L P TKVEESFN+QA HD+++H NLS YDH++FPGVVPRTFIGP+ +
Sbjct: 7 IVIIVTIIHIILAPGTKVEESFNVQATHDLMFHLPTNLSNYDHSQFPGVVPRTFIGPISL 66
Query: 257 SMLCSPAVGVLFLSGFNKFWVQYAVRLTLALTVIVTWSRLRNVIQKQFGNTFAWWYSLIT 436
++L SP + K W +R TL L + + + ++FG A + LI
Sbjct: 67 AILSSPMSFIFRFWAIPKMWQLLLIRATLGLMNAMAFLYFARSVNRKFGRETAMYLRLIM 126
Query: 437 ITQFHFMFYMSRPLPNIMVLPLVLLAYEGWFSGSNKQFIISAGAAIVIFRSELAMLFG-L 613
TQFH++FYMSRPLPN L LV++ +E G + + A A++++FR EL +L+G +
Sbjct: 127 CTQFHYIFYMSRPLPNTFALILVMIVFERLLEGRYESAVRYATASVILFRCELVLLYGPI 186
Query: 614 FL 619
FL
Sbjct: 187 FL 188
>AF068721-4|AAC19260.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1055.2 protein.
Length = 298
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 252 MSGPINVRGTTPGNSLWSYSERL 184
+SGPI+++ +P NS WSY RL
Sbjct: 241 LSGPIDLQKCSPQNSTWSYDSRL 263
>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
T01C4.1 protein.
Length = 1484
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 355 YCQCQGQANRVLDPKFI--EPRKK*NTNSWRTQHRNNERTNKCSR 227
YC+C+G N DP I EP K W TQ + + +C +
Sbjct: 1392 YCECKGCVNYRKDPDLIVKEPVKPSREIQWYTQDAPDGKRGRCGK 1436
>AL110482-4|CAB60337.1| 371|Caenorhabditis elegans Hypothetical
protein Y39G8B.3 protein.
Length = 371
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 362 TWSRLRNVIQKQFGNTFAWWYSLITITQFHFMFYMSRPLPNIMVLPLVLLA 514
TW + VI Q N + + +F FMF ++ PN++ + L+L A
Sbjct: 174 TWIAVTLVISAQIFNFVVAYLFYVRYVEFLFMFIVA-ATPNVLAVTLILFA 223
>AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical
protein Y6E2A.2 protein.
Length = 322
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 141 VLIFRLCMIFYITDITFQSTTTMSSRELCREHLLVRSLFRCCVLQLLVFYFFL 299
+++F L IFY T+ +SS L LFR V+Q ++ +FF+
Sbjct: 213 IMVFTLSAIFYFGIQTYIHLYRLSSIAGLDNRELQNQLFRTLVVQTVIPFFFM 265
>AL110484-9|CAB54400.1| 77|Caenorhabditis elegans Hypothetical
protein Y38E10A.9 protein.
Length = 77
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 408 VFPNCFCITFLSLLHVTITVSARVKRTAYWTQNLLNP 298
+F N F LSLL T++VSA R T L NP
Sbjct: 1 MFSNLFIFLVLSLLLSTVSVSAGAIRQRRATPELFNP 37
>AF106577-5|AAC78192.2| 353|Caenorhabditis elegans Hypothetical
protein F46F5.14 protein.
Length = 353
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = -1
Query: 321 WTQNLLNPERN---KTPTAGEHS-IEIMSGPINVRGTTPGNSLWSYSERL 184
W N L P N K G ++G I++ PGNS WS+ RL
Sbjct: 271 WKSNQLKPTPNTPLKPKEMGTSQWYNPLNGTIDLAKCHPGNSTWSFDRRL 320
>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
protein F07G11.9 protein.
Length = 2025
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 355 YCQCQGQANRVLDPKFI--EPRKK*NTNSWRTQHRNNERTNKCSR 227
YC C+G N DP I +P K W TQ + + +C +
Sbjct: 1929 YCDCKGCVNYRKDPDLIIKKPVKPSREIQWYTQDAPDGKRGRCGK 1973
>U23521-2|AAC46815.2| 316|Caenorhabditis elegans Hypothetical
protein F41C3.8a protein.
Length = 316
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 223 CAANIYWSAHYFDAVFSSCWCFISFWVQ*ILGPIRGSLDPGTDSNCNME 369
C IYWSA + F +C I F V +L I GS+ + + N++
Sbjct: 270 CDPTIYWSAFFACTAFLIFYCVIIFLVICLL--IVGSVKESSSQDQNLD 316
>U23521-1|ABD63220.1| 348|Caenorhabditis elegans Hypothetical
protein F41C3.8b protein.
Length = 348
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 223 CAANIYWSAHYFDAVFSSCWCFISFWVQ*ILGPIRGSLDPGTDSNCNME 369
C IYWSA + F +C I F V +L I GS+ + + N++
Sbjct: 302 CDPTIYWSAFFACTAFLIFYCVIIFLVICLL--IVGSVKESSSQDQNLD 348
>AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical
protein C08F1.8 protein.
Length = 600
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 437 ITQFHFMFYMSRPLPNIMVLPLVLLA 514
I F++ Y+S P+ NI+V+P+V +A
Sbjct: 197 IIGFYYTTYVSCPILNIIVMPIVYVA 222
>AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine
receptor, class v protein26 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.5
Identities = 29/108 (26%), Positives = 47/108 (43%)
Frame = +2
Query: 299 GFNKFWVQYAVRLTLALTVIVTWSRLRNVIQKQFGNTFAWWYSLITITQFHFMFYMSRPL 478
GFN F+ V L L ++V RLR V K + TF YSL+ H + + L
Sbjct: 11 GFNVFYGMSIVTLPLYFIILVCLVRLRQV-SKSYRTTF---YSLLL---QHCIADIISML 63
Query: 479 PNIMVLPLVLLAYEGWFSGSNKQFIISAGAAIVIFRSELAMLFGLFLI 622
I + P ++ F +++ I+A +I+ S G+ L+
Sbjct: 64 GYIALTPAREISVIRQFYFDYQEYYIAAATYNIIYVSLYIRCIGILLL 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497,435
Number of Sequences: 27780
Number of extensions: 338711
Number of successful extensions: 976
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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